{ "info": { "author": "Zulko", "author_email": "", "bugtrack_url": null, "classifiers": [], "description": "GeneBlocks\n=============\n\n.. image:: https://travis-ci.org/Edinburgh-Genome-Foundry/DnaChisel.svg?branch=master\n :target: https://travis-ci.org/Edinburgh-Genome-Foundry/Geneblocks\n :alt: Travis CI build status\n\n.. image:: https://coveralls.io/repos/github/Edinburgh-Genome-Foundry/Geneblocks/badge.svg\n :target: https://coveralls.io/github/Edinburgh-Genome-Foundry/Geneblocks\n\nGeneBlocks is a Python library to compare DNA sequences. It can be used to:\n\n- Find common blocks in a group of DNA sequences, to factorize them (e.g. only analyze or synthetize each common block once)\n- Highlight differences between sequences (insertions, deletions, mutations)\n- Transfer Genbank features from one record to another sharing similar subsequences.\n\nAt the Edinburgh Genome Foundry, we use GeneBlocks to optimize sequence assembly, explore sets of non-annotated sequences, or visualize the differences\nbetween different versions of a sequence, and re-annotate records coming from third parties such as DNA manufacturers.\n\nInfos\n-----\n\n**PIP installation:**\n\n.. code:: bash\n\n pip install geneblocks\n\n**Github Page**\n\n``_\n\n**Live demos**\n\n\n`Find common sequence blocks `_\n\n`Plot sequence diffs `_\n\n`Transfer Genbank features between records `_\n\n**License:** MIT, Copyright Edinburgh Genome Foundry\n\nMore biology software\n-----------------------\n\n.. image:: https://raw.githubusercontent.com/Edinburgh-Genome-Foundry/Edinburgh-Genome-Foundry.github.io/master/static/imgs/logos/egf-codon-horizontal.png\n :target: https://edinburgh-genome-foundry.github.io/\n\nGeneblocks is part of the `EGF Codons `_ synthetic biology software suite for DNA design, manufacturing and validation.", "description_content_type": "", "docs_url": null, "download_url": "", "downloads": { "last_day": -1, "last_month": -1, "last_week": -1 }, "home_page": "https://github.com/Edinburgh-Genome-Foundry/geneblocks", "keywords": "DNA sequence blocks diff synthetic-biology bioinformatics", "license": "MIT", "maintainer": "", "maintainer_email": "", "name": "geneblocks", "package_url": "https://pypi.org/project/geneblocks/", "platform": "", "project_url": "https://pypi.org/project/geneblocks/", "project_urls": { "Homepage": "https://github.com/Edinburgh-Genome-Foundry/geneblocks" }, "release_url": "https://pypi.org/project/geneblocks/1.1.1/", "requires_dist": null, "requires_python": "", "summary": "Library to compare DNA sequences (diff, common blocks, etc.)", "version": "1.1.1" }, "last_serial": 5991310, "releases": { "0.3.0": [ { "comment_text": "", "digests": { "md5": "fc0b8b808fbd3bc502dc8f7e4a7d3baa", "sha256": "e0d36100d43899b668835282355ac8f66a7ebdc11458df36cb0d423f7efd771c" }, "downloads": -1, "filename": "geneblocks-0.3.0.tar.gz", "has_sig": false, "md5_digest": "fc0b8b808fbd3bc502dc8f7e4a7d3baa", "packagetype": "sdist", "python_version": "source", "requires_python": null, "size": 12942, "upload_time": "2018-10-29T16:58:13", "url": "https://files.pythonhosted.org/packages/77/06/eae5a1cdc8f1c5fdb78299a88a4d30f370be5a9927dd1ce386f3b746f678/geneblocks-0.3.0.tar.gz" } ], "0.3.1": [ { "comment_text": "", "digests": { "md5": "3bc9bf72d8c185c6ab25a203005e95ef", "sha256": "c801cf227affaced7ee07bf963ce1bf31e9e8869966764a7c6888046e1745e50" }, "downloads": -1, "filename": "geneblocks-0.3.1.tar.gz", "has_sig": false, "md5_digest": "3bc9bf72d8c185c6ab25a203005e95ef", "packagetype": "sdist", "python_version": "source", "requires_python": null, "size": 12379, "upload_time": "2018-10-29T17:08:23", "url": "https://files.pythonhosted.org/packages/fa/4a/9dc7bc55094d042e1823fba2fa6a42711ff65e0949665d2fd9d3d3f5c2b9/geneblocks-0.3.1.tar.gz" } ], "0.3.2": [ { "comment_text": "", "digests": { "md5": "2820ba7fa807f7ef1cdd6c3fc890ac80", "sha256": "aa9bf85387c881064178edce1abdadc47822ea4b9d2d2333d60f3aad3c59e095" }, "downloads": -1, "filename": "geneblocks-0.3.2.tar.gz", "has_sig": false, "md5_digest": "2820ba7fa807f7ef1cdd6c3fc890ac80", "packagetype": "sdist", "python_version": "source", "requires_python": null, "size": 12385, "upload_time": "2018-10-29T19:54:01", "url": "https://files.pythonhosted.org/packages/20/c5/37b040f9a19ecc5099a70fba873570cbde0df3c80feb906de2195edef485/geneblocks-0.3.2.tar.gz" } ], "0.3.3": [ { "comment_text": "", "digests": { "md5": "0889ded208d6864c0f209505d9da561c", "sha256": "f765cadbd2214350e833f0b22603016698de03873a4e81320a71ea7183afb199" }, "downloads": -1, "filename": "geneblocks-0.3.3.tar.gz", "has_sig": false, "md5_digest": "0889ded208d6864c0f209505d9da561c", "packagetype": "sdist", "python_version": "source", "requires_python": null, "size": 13061, "upload_time": "2019-01-17T12:25:36", "url": "https://files.pythonhosted.org/packages/15/a5/42069e052a2383db2eb100dc1fbef58fd16447fcc914337153046a0750e5/geneblocks-0.3.3.tar.gz" } ], "0.3.4": [ { "comment_text": "", "digests": { "md5": "5478b8c57afeeaade6466df79f54a6ec", "sha256": "c9923adf49b45b05456bdca8ce7db0bf47204d7727b4365d5f91da3a63ac5f13" }, "downloads": -1, "filename": "geneblocks-0.3.4.tar.gz", "has_sig": false, "md5_digest": "5478b8c57afeeaade6466df79f54a6ec", "packagetype": "sdist", "python_version": "source", "requires_python": null, "size": 15745, "upload_time": "2019-01-17T13:30:53", "url": "https://files.pythonhosted.org/packages/3e/d4/5a557f13e1a6fd795d45f8bbacf48f4c97c41078b0e8993cb457b414f865/geneblocks-0.3.4.tar.gz" } ], "0.3.5": [ { "comment_text": "", "digests": { "md5": "bb3bf3d079022e33ebdd3740548c8e97", "sha256": "3bdaf04e74de03fe1d5385074fb37e1b9a46203a7968677005d4af187700f832" }, "downloads": -1, "filename": "geneblocks-0.3.5.tar.gz", "has_sig": false, "md5_digest": "bb3bf3d079022e33ebdd3740548c8e97", "packagetype": "sdist", "python_version": "source", "requires_python": null, "size": 19048, "upload_time": "2019-01-23T17:19:02", "url": "https://files.pythonhosted.org/packages/34/b8/a7121bd78ae1b1411af7b2a9b9897f961eb4424bab819abc4c64995afa45/geneblocks-0.3.5.tar.gz" } ], "0.3.6": [ { "comment_text": "", "digests": { "md5": "b877eb3151220ce06c69144803422a75", "sha256": "460a8a41ea1ada24454bccc63840d381ebd9c61e68d6d2e0970d4797006e31a2" }, "downloads": -1, "filename": "geneblocks-0.3.6.tar.gz", "has_sig": false, "md5_digest": "b877eb3151220ce06c69144803422a75", "packagetype": "sdist", "python_version": "source", "requires_python": null, "size": 19571, "upload_time": "2019-01-24T14:21:06", "url": "https://files.pythonhosted.org/packages/80/bb/93f1aacb2fe321eb5334392f30f26e27c5cd6cc730b304174b04cf1880e1/geneblocks-0.3.6.tar.gz" } ], "0.3.7": [ { "comment_text": "", "digests": { "md5": "4fe9860ed703faa8539cd5aed6339b9c", "sha256": "64b4f46538b9bbefb93e35e0b11aee988e82843a5dedc0766eee294011d6437a" }, "downloads": -1, "filename": "geneblocks-0.3.7.tar.gz", "has_sig": false, "md5_digest": "4fe9860ed703faa8539cd5aed6339b9c", "packagetype": "sdist", "python_version": "source", "requires_python": null, "size": 19872, "upload_time": "2019-02-28T20:06:35", "url": "https://files.pythonhosted.org/packages/6f/1f/f07fa0bc720b644c3e6aad8ad65af494c8c71d74319fc70c627f09f56ec1/geneblocks-0.3.7.tar.gz" } ], "0.4.0": [ { "comment_text": "", "digests": { "md5": "7102697a6df94e7125a3233d28a12775", "sha256": "c77ef4c37b2492d527eb13594d343ea5514ffc29988ea6ba51fc7e4063798bd1" }, "downloads": -1, "filename": "geneblocks-0.4.0.tar.gz", "has_sig": false, "md5_digest": "7102697a6df94e7125a3233d28a12775", "packagetype": "sdist", "python_version": "source", "requires_python": null, "size": 19925, "upload_time": "2019-03-11T21:43:47", "url": "https://files.pythonhosted.org/packages/44/5b/47516fcb4738f57895583f15bb1aa77501b46ec1e6ac08df2c135daa4d54/geneblocks-0.4.0.tar.gz" } ], "0.5.0": [ { "comment_text": "", "digests": { "md5": "152db57ecea0233432afb41ac1e3055f", "sha256": "dbd86dd125055141d1f2b32c67d02028ad8b3910460789cf35acb05d08bbf3d4" }, "downloads": -1, "filename": "geneblocks-0.5.0.tar.gz", "has_sig": false, "md5_digest": "152db57ecea0233432afb41ac1e3055f", "packagetype": "sdist", "python_version": "source", "requires_python": null, "size": 20198, "upload_time": "2019-09-19T19:06:51", "url": "https://files.pythonhosted.org/packages/b5/89/ff52e94adbbd2cd082640c467df4b83810be513ed58cd5afab987e91944e/geneblocks-0.5.0.tar.gz" } ], "1.0.0": [ { "comment_text": "", "digests": { "md5": "d02520026489ebb142ce0d1be9c2a537", "sha256": "97da5f030a55c9ccfab3db8235f726e484a63602d6712ee1ffca1ebc9da17b5d" }, "downloads": -1, "filename": "geneblocks-1.0.0.tar.gz", "has_sig": false, "md5_digest": "d02520026489ebb142ce0d1be9c2a537", "packagetype": "sdist", "python_version": "source", "requires_python": null, "size": 22985, "upload_time": "2019-09-30T23:00:45", "url": "https://files.pythonhosted.org/packages/4a/3d/1edb8b764f54b5c72192520da9aea49fc16fdaa2e14e5e966438bee0b42b/geneblocks-1.0.0.tar.gz" } ], "1.1.0": [ { "comment_text": "", "digests": { "md5": "b4c8db4262df6df5cafa1ba47956f192", "sha256": "e2c4883204bdab0c3e08bd45935de8d99309534b500637157e0b238051c535bc" }, "downloads": -1, "filename": "geneblocks-1.1.0.tar.gz", "has_sig": false, "md5_digest": "b4c8db4262df6df5cafa1ba47956f192", "packagetype": "sdist", "python_version": "source", "requires_python": null, "size": 23072, "upload_time": "2019-10-06T19:53:47", "url": "https://files.pythonhosted.org/packages/5c/e4/07b080f56605e35346f813694d76f954df8c4a5da31feda916b1c4815234/geneblocks-1.1.0.tar.gz" } ], "1.1.1": [ { "comment_text": "", "digests": { "md5": "e0bae6130c8a3f6ffd755da292991238", "sha256": "0d049c2b54df4b6563636fab537084470bd23d71760b2a200cedfed893eaba45" }, "downloads": -1, "filename": "geneblocks-1.1.1.tar.gz", "has_sig": false, "md5_digest": "e0bae6130c8a3f6ffd755da292991238", "packagetype": "sdist", "python_version": "source", "requires_python": null, "size": 23250, "upload_time": "2019-10-17T17:10:11", "url": "https://files.pythonhosted.org/packages/ca/a0/9e03b7e6a8bc0c9886c8fbbb5d8979432216960e437a2cef4a622ac2f9f0/geneblocks-1.1.1.tar.gz" } ] }, "urls": [ { "comment_text": "", "digests": { "md5": "e0bae6130c8a3f6ffd755da292991238", "sha256": "0d049c2b54df4b6563636fab537084470bd23d71760b2a200cedfed893eaba45" }, "downloads": -1, "filename": "geneblocks-1.1.1.tar.gz", "has_sig": false, "md5_digest": "e0bae6130c8a3f6ffd755da292991238", "packagetype": "sdist", "python_version": "source", "requires_python": null, "size": 23250, "upload_time": "2019-10-17T17:10:11", "url": "https://files.pythonhosted.org/packages/ca/a0/9e03b7e6a8bc0c9886c8fbbb5d8979432216960e437a2cef4a622ac2f9f0/geneblocks-1.1.1.tar.gz" } ] }