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        "author": "Guanliang Meng",
        "author_email": "mengguanliang@foxmail.com",
        "bugtrack_url": null,
        "classifiers": [
            "Development Status :: 3 - Alpha",
            "Intended Audience :: Science/Research",
            "License :: OSI Approved :: GNU General Public License v3 or later (GPLv3+)",
            "Operating System :: MacOS :: MacOS X",
            "Operating System :: Microsoft :: Windows",
            "Operating System :: POSIX :: Linux",
            "Programming Language :: Python :: 3",
            "Topic :: Scientific/Engineering :: Bio-Informatics"
        ],
        "description": "# gbseqextractor\n\n## 1 Introduction\n\n`gbseqextractor` is a tool to extract any CDS or rNRA or tRNA DNA sequences of genes from Genbank file. with `Biopython` (http://www.biopython.org/)\n\n## 2 Installation\n\n    pip install gbseqextractor\n\nThere will be a command `gbseqextractor` created under the same directory as your `pip` command.\n\n## 3 Usage\n\n    $ gbseqextractor\n    usage: gbseqextractor.py [-h] -f <STR> [-prefix <STR>] [-seqPrefix <STR>]\n                             [-types {CDS,rRNA,tRNA,wholeseq} [{CDS,rRNA,tRNA,wholeseq} ...]]\n                             [-gi] [-p] [-t] [-s] [-l] [-rv] [-F]\n\n    extract any CDS or rNRA or tRNA DNA sequences of genes from Genbank file.\n    Note: the position on ID line is 0 left-most! Seqid will be the value of\n    '/gene=' or '/product=', if they both were not present, the gene will not be\n    output!\n\n    optional arguments:\n      -h, --help            show this help message and exit\n      -f <STR>              Genbank file\n      -prefix <STR>         prefix of output file.\n      -seqPrefix <STR>      prefix of each seq id. default: None\n      -types {CDS,rRNA,tRNA,wholeseq} [{CDS,rRNA,tRNA,wholeseq} ...]\n                            what kind of genes you want to extract? wholeseq for\n                            whole fasta seq.[CDS]\n      -gi                   use gi number as sequence ID instead of accession\n                            number when gi number is present. (default: accession\n                            number)\n      -p                    output the position information on the ID line [False]\n      -t                    output the taxonomy lineage on ID line [False]\n      -s                    output the species name on the ID line [False]\n      -l                    output the seq length on the ID line [False]\n      -rv                   reverse and complement the sequences if the gene is on\n                            minus strand [False]\n      -F                    only output full length genes [False]\n   \n## Author\nGuanliang MENG\n\n## Citation\nThis script is part of the package `MitoZ`, when you use the script in your work, please cite:\n    \n    MitoZ: A toolkit for mitochondrial genome assembly, annotation and visualization with NGS data. Guangliang Meng, Yiyuan Li, Chentao Yang, Shanlin Liu (in manuscript)\n\nMeanwhile, since `gbseqextractor` makes use of `Biopython`, you should alos cite it if you use `gbseqextractor` in your work:\n\n    Peter J. A. Cock, Tiago Antao, Jeffrey T. Chang, Brad A. Chapman, Cymon J. Cox, Andrew Dalke, Iddo Friedberg, Thomas Hamelryck, Frank Kauff, Bartek Wilczynski, Michiel J. L. de Hoon: \u201cBiopython: freely available Python tools for computational molecular biology and bioinformatics\u201d. Bioinformatics 25 (11), 1422\u20131423 (2009). https://doi.org/10.1093/bioinformatics/btp163\n\nPlease go to `http://www.biopython.org/` for more details.",
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        "name": "gbseqextractor",
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