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        "author": "Michael Barton",
        "author_email": "mail@michaelbarton.me.uk",
        "bugtrack_url": null,
        "classifiers": [
            "Intended Audience :: Science/Research",
            "License :: OSI Approved :: BSD License",
            "Natural Language :: English",
            "Operating System :: POSIX",
            "Programming Language :: Python :: 3.5",
            "Topic :: Scientific/Engineering :: Bio-Informatics"
        ],
        "description": "GAET\n====\n\nGene-based assembly evaluation tool - evaluate a single assembly or\ncompare two assemblies using their annotations.\n\nGetting Started\n---------------\n\n::\n\n    pip install [--user] gaet\n\n    gaet assembly.gff\n    gaet --reference reference.gff assembly.gff\n\nGaet is written in python 3. If you would prefer, there is a `precompiled\nversion of gaet`_ which runs on Linux systems.\n\n.. _precompiled version of gaet: https://s3-us-west-1.amazonaws.com/gaet/releases/latest.tar.xz\n\nDocumentation\n-------------\n\nSee `gaet(1)`_ for a description of how to run gaet. See `gaet-format(5)`_\nfor a description of the output metrics generated by gaet.\n\n.. _gaet(1): https://gitlab.com/michaelbarton/gaet/blob/master/doc/src/gaet.1.md\n.. _gaet-format(5): https://gitlab.com/michaelbarton/gaet/blob/master/doc/src/gaet-format.5.md\n\nRunning the tests\n-----------------\n\nGaet has both unit tests and feature tests. The unit tests check individual\npython functions within the code. The feature tests are run against the\ncompiled version of gaet and ensure the program works as a whole.\n\n::\n\n    make test\n    make feature\n\nUpon a successful pull request onto the master branch, where all tests\npass, a new version of gaet will be released to pypi, and a new precompiled\nversion released to S3.\n\nBuilt With\n----------\n\n-  `funcy <https://pypi.python.org/pypi/funcy>`__ - functional\n   programming for python\n-  `gffutils <https://pypi.python.org/pypi/gffutils>`__ - Utilities for\n   accessing GFF data\n-  `pyfaidx <https://pypi.python.org/pypi/pyfaidx>`__ - Accessing\n   substrings of FASTA data\n-  `ruamel.yaml <https://pypi.python.org/pypi/ruamel.yaml>`__ - actively\n   maintained YAML parsing for python\n\nAuthors\n-------\n\n-  `Michael Barton <http://michaelbarton.me.uk>`__\n\nLicense\n-------\n\nThis project is licensed under the BSD License - see the\n`LICENSE.txt <LICENSE.txt>`__ file for details.\n\nSee also\n--------\n\n-  `QUAST <http://quast.sourceforge.net/>`__- check the completeness of\n   an assembly or compare with a reference using size metrics such\n   nga50.\n\n-  `checkm <http://ecogenomics.github.io/CheckM/>`__ - checks the\n   completeness of an assembly using the expectation of certain\n   essential genes.",
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        "keywords": "genomics bioinformatics sequencing assembly",
        "license": "BSD",
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        "maintainer_email": null,
        "name": "gaet",
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