{
    "info": {
        "author": "Tinashe M. Tapera",
        "author_email": "tinashemtapera@gmail.com",
        "bugtrack_url": null,
        "classifiers": [
            "License :: OSI Approved :: MIT License",
            "Operating System :: OS Independent",
            "Programming Language :: Python :: 3.6"
        ],
        "description": "# `fw-gear-audit`\nA Python SDK tool for auditing gear run data\n\nUse this tool to fetch data from Flywheel describing which gears have been run within a project and how they were configured. You can also join SeqInfo data to help filter your data by sequences.\n\n```\nusage: fw-gear-audit [-h] --project PROJECT [PROJECT ...]\n                            [--subject SUBJECT [SUBJECT ...]]\n                            [--session SESSION [SESSION ...]] [--verbose]\n                            [--dry_run] (--path PATH | --fname FNAME)\n                            (--by-runs | --by-sequences)\n```\n\n# Goal\nYou can run many analysis gears on Flywheel. Keeping track of these within a subject is easy with the GUI, but to view this data en masse requires the use of the SDK to loop over each subject and collect their gear run data. This becomes troublesome when, for example with fMRIPrep, there can be many runs of the same gear due to version updates, feature testing, incorrect configs, or random errors causing gears to crash.\n\nThis leaves users in a situation where they may not be sure if the correct version and configuration of fMRIPrep was run successfully for 100% of the participants in their 200-cohort study.\n\n`fw-gear-audit` aims to remedy this situation by quickly and efficiently gathering data about gear runs and providing the user with a tabular `.csv` file for their records.\n\n# Features\n\n* Use the `--subject` and `--session` flags to filter your data within project by subject or session labels. \n* By default, gear run data includes the gear name, version, runtime and date, and completion status. Use the `--verbose` flag to output both gear run data and configuration information for each run\n* Choose between `--by-runs` to output a table where each row is a gear run, or `--by-sequences` to output a table where each gear run is accompanied by a `seqInfo` subtable\n\n## By Run:\n\n**subject**|**session**|**gearName**|**gearVersion**|**runLabel**|**runDatetime**|**runRuntimeMS**|**runStatus**\n:-----:|:-----:|:-----:|:-----:|:-----:|:-----:|:-----:|:-----:\n104059|10762|fmriprep125|0.1.2\\_1.2.5|fmriprep\\_SDK\\_010762|2019-04-15 20:45:24.774000+00:00|63361|failed\n104059|10762|fmriprep125|0.1.2\\_1.2.5|fmriprep\\_SDK\\_010762|2019-04-16 16:27:02.664000+00:00|15829|failed\n104059|10762|fmriprep125|0.1.7\\_1.2.5|fmriprep\\_SDK\\_010762\\_2019-04-22\\_17:32|2019-04-22 21:33:25.870000+00:00|14055|failed\n104059|10762|fmriprep125|0.1.7\\_1.2.5|fmriprep\\_SDK\\_010762\\_2019-04-24\\_11:31|2019-04-24 15:36:34.178000+00:00|287719|failed\n104059|10762|fmriprep125|0.1.7\\_1.2.5|fmriprep\\_SDK\\_010762\\_2019-04-24\\_16:45|2019-04-24 20:45:21.188000+00:00|55392635|complete\n104059|10762|xcpengine-fw|1.063|XCP\\_SDK 2019-05-17 11:35:54.021070|2019-05-17 15:35:54.085000+00:00|5553043|complete\n104059|10762|xcpengine-fw|1.0633|XCP\\_SDK 2019-06-17 16:44:12.682716|2019-06-17 20:44:12.754000+00:00|312121575|failed\n104059|10762|xcpengine-fw|1.06338|XCP\\_SDK\\_task\\_module\\_2019-06-26 13:08:13.199392|2019-06-26 17:08:13.274000+00:00|28015|complete\n104059|10762|xcpengine-fw|1.06338|XCP\\_SDK\\_taskregress\\_module\\_2019-06-26 19:10:02|2019-06-26 19:10:02.888000+00:00|27375|complete\n86486|11196|fmriprep125|0.1.2\\_1.2.5|fmriprep125 04/05/2019 14:59:38|2019-04-05 19:00:04.294000+00:00|73752452|complete\n86486|11196|fmriprep125|0.1.2\\_1.2.5|fmriprep\\_SDK\\_11196|2019-04-15 20:45:35.356000+00:00|44505363|failed\n86486|11196|fmriprep125|0.1.2\\_1.2.5|fmriprep\\_SDK\\_11196|2019-04-16 16:27:13.458000+00:00|44010936|failed\n86486|11196|fmriprep125|0.1.2\\_1.2.5|fmriprep125 04/17/2019 11:33:10|2019-04-17 15:33:57.530000+00:00|30092|failed\n86486|11196|fmriprep125|0.1.2\\_1.2.5|fmriprep125 04/17/2019 12:36:44|2019-04-17 16:37:15.579000+00:00|73098331|complete\n86486|11196|fmriprep125|0.1.7\\_1.2.5|fmriprep\\_SDK\\_11196\\_2019-04-22\\_17:32|2019-04-22 21:33:36.983000+00:00|16347|failed\n86486|11196|fmriprep125|0.1.7\\_1.2.5|fmriprep125 04/23/2019 16:07:28|2019-04-23 20:07:49.717000+00:00|17150|failed\n86486|11196|fmriprep125|0.1.7\\_1.2.5|fmriprep125 04/23/2019 16:17:26|2019-04-23 20:17:45.532000+00:00|65726568|complete\n86486|11196|fmriprep125|0.1.7\\_1.2.5|fmriprep\\_SDK\\_11196\\_2019-04-24\\_11:31|2019-04-24 15:36:42.723000+00:00|52406897|complete\n86486|11196|xcpengine-fw|1.063|xcpengine-fw 04/27/2019 19:33:41|2019-04-27 23:34:13.359000+00:00|4775298|complete\n86486|11196|fw-heudiconv|0.1.11\\_0.1.0|fw-heudiconv 05/10/2019 15:14:42|2019-05-10 19:14:57.904000+00:00|14759|complete\n86486|11196|xcpengine-fw|1.063|xcpengine-fw 05/15/2019 10:37:09|2019-05-15 14:37:37.681000+00:00|320600623|complete\n86486|11196|xcpengine-fw|1.063|xcpengine-fw 05/15/2019 10:37:44|2019-05-15 14:43:11.425000+00:00|318911954|complete\n86486|11196|xcpengine-fw|1.063|xcpenginestruct 05/25/2019 19:14:49|2019-05-25 23:15:35.105000+00:00|322438769|complete\n86486|11196|xcpengine-fw|1.0631|xcpengine-fw 06/13/2019 12:59:24|2019-06-13 17:00:03.867000+00:00|1457|failed\n86486|11196|xcpengine-fw|1.0633|XCP\\_SDK 2019-06-17 16:45:31.934948|2019-06-17 20:45:32.002000+00:00|316570122|failed\n86486|11196|xcpengine-fw|1.06336|xcpengine-fw 06/25/2019 14:50:03|2019-06-25 18:50:46.914000+00:00|31014|complete\n86486|11196|xcpengine-fw|1.06337|xcpengine-fw 06/25/2019 15:41:09|2019-06-25 19:42:04.137000+00:00|1030893|complete\n86486|11196|xcpengine-fw|1.06337|xcpengine-fw 06/25/2019 15:56:22|2019-06-25 19:57:17.108000+00:00|1534523|complete\n86486|11196|xcpengine-fw|1.06338|XCP\\_SDK\\_task\\_module\\_2019-06-26 13:08:18.700338|2019-06-26 17:08:18.774000+00:00|1562030|complete\n86486|11196|xcpengine-fw|1.06338|XCP\\_SDK\\_taskregress\\_module\\_2019-06-26 19:10:09|2019-06-26 19:10:09.688000+00:00|1031698|complete\n86486|11196|xcpengine-fw|1.06339|xcpengine-fw 07/02/2019 12:38:10|2019-07-02 16:39:02.284000+00:00|1292985|complete\n\nThis allows you to filter, for e.g., which subjects successfully ran XCPEngine with version 1.06338\n```\n# Tidy R syntax:\ndf %>% \n  filter(str_detect(gearName, 'xcpengine')) %>% \n  filter(str_detect(runStatus, 'complete')) %>%\n  filter(str_detect(gearVersion, '6338'))\n```\n\n## By Sequences\n\nThis option creates a data frame where each run above is also joined by a sequence info table for that participant:\n\n**subject**|**session**|**gearName**|**gearVersion**|**runLabel**|**runDatetime**|**runRuntimeMS**|**runStatus**|**seriesID**|**dcmDirName**|**dim1**|**dim2**|**dim3**|**dim4**|**TR**|**TE**|**protocolName**|**isMotionCorrected**|**isDerived**|**seriesDescription**|**sequenceName**|**imageType**|**seriesUid**\n:-----:|:-----:|:-----:|:-----:|:-----:|:-----:|:-----:|:-----:|:-----:|:-----:|:-----:|:-----:|:-----:|:-----:|:-----:|:-----:|:-----:|:-----:|:-----:|:-----:|:-----:|:-----:|:-----:\n104059|10762|fmriprep125|0.1.2\\_1.2.5|fmriprep\\_SDK\\_010762|2019-04-15 20:45:24.774000+00:00|63361|failed|5c75633aba2580002d3902e6|Localizer\\_1\\_i00003.nii.gz|512|512|3|-1|0.0086|0.004|Localizer|False|False|Localizer|\\_fl2d1|('ORIGINAL', 'PRIMARY', 'M', 'ND', 'NORM')|1.3.12.2.1107.5.2.43.66044.2018041814140178131880096.0.0.0\n104059|10762|fmriprep125|0.1.2\\_1.2.5|fmriprep\\_SDK\\_010762|2019-04-15 20:45:24.774000+00:00|63361|failed|5c75633aba2580002d3902e6|Localizer\\_1\\_i00002.nii.gz|512|512|3|-1|0.0086|0.004|Localizer|False|False|Localizer|\\_fl2d1|('ORIGINAL', 'PRIMARY', 'M', 'ND', 'NORM')|1.3.12.2.1107.5.2.43.66044.2018041814140178131880096.0.0.0\n104059|10762|fmriprep125|0.1.2\\_1.2.5|fmriprep\\_SDK\\_010762|2019-04-15 20:45:24.774000+00:00|63361|failed|5c75633aba2580002d3902e6|Localizer\\_1\\_i00001.nii.gz|512|512|3|-1|0.0086|0.004|Localizer|False|False|Localizer|\\_fl2d1|('ORIGINAL', 'PRIMARY', 'M', 'ND', 'NORM')|1.3.12.2.1107.5.2.43.66044.2018041814140178131880096.0.0.0\n104059|10762|fmriprep125|0.1.2\\_1.2.5|fmriprep\\_SDK\\_010762|2019-04-15 20:45:24.774000+00:00|63361|failed|5c756339ba25800038398297|restingBOLD\\_mb6\\_1200\\_10.nii.gz|448|448|1200|-1|0.5|0.025|restingBOLD\\_mb6\\_1200|False|False|restingBOLD\\_mb6\\_1200|epfid2d1\\_64|('ORIGINAL', 'PRIMARY', 'M', 'MB', 'ND', 'NORM', 'MOSAIC')|1.3.12.2.1107.5.2.43.66044.201804181426368296184317.0.0.0\n104059|10762|fmriprep125|0.1.2\\_1.2.5|fmriprep\\_SDK\\_010762|2019-04-15 20:45:24.774000+00:00|63361|failed|5c756339ba25800038398298|bbl1\\_restbold1\\_124mb\\_11.nii.gz|448|448|124|-1|3|0.032|bbl1\\_restbold1\\_124mb|False|False|bbl1\\_restbold1\\_124mb|epfid2d1\\_64|('ORIGINAL', 'PRIMARY', 'M', 'ND', 'NORM', 'MOSAIC')|1.3.12.2.1107.5.2.43.66044.2018041814370267454559619.0.0.0\n104059|10762|fmriprep125|0.1.2\\_1.2.5|fmriprep\\_SDK\\_010762|2019-04-15 20:45:24.774000+00:00|63361|failed|5c756339ba2580003939a503|ASL\\_3DSPIRAL\\_V20\\_GE\\_12\\_Eq\\_1.nii.gz|64|64|64|-1|0.022|0.01003| |False|False| | |()| \n104059|10762|fmriprep125|0.1.2\\_1.2.5|fmriprep\\_SDK\\_010762|2019-04-15 20:45:24.774000+00:00|63361|failed|5c756339ba2580003939a503|ASL\\_3DSPIRAL\\_V20\\_GE\\_12.nii.gz|64|64|64|-1|4.6255|0.01003|ASL\\_3DSPIRAL\\_V20\\_GE|False|False|ASL\\_3DSPIRAL\\_V20\\_GE\\_M0|Sp3d1|('ORIGINAL', 'PRIMARY', 'M', 'ND')|1.3.12.2.1107.5.2.43.66044.2018041814445154289476985.0.0.0\n104059|10762|fmriprep125|0.1.2\\_1.2.5|fmriprep\\_SDK\\_010762|2019-04-15 20:45:24.774000+00:00|63361|failed|5c756339ba25800038398296|ASL\\_3DSPIRAL\\_V20\\_GE\\_13.nii.gz|64|64|2560|-1|4.6255|0.01003|ASL\\_3DSPIRAL\\_V20\\_GE|False|False|ASL\\_3DSPIRAL\\_V20\\_GE\\_ASL|Sp3d1|('ORIGINAL', 'PRIMARY', 'M', 'ND')|1.3.12.2.1107.5.2.43.66044.2018041814445430648677051.0.0.0\n104059|10762|fmriprep125|0.1.2\\_1.2.5|fmriprep\\_SDK\\_010762|2019-04-15 20:45:24.774000+00:00|63361|failed|5c756339ba2580002e38dd54|ASL\\_3DSPIRAL\\_V20\\_GE\\_14.nii.gz|64|64|32|-1|4.6255|0.01003|ASL\\_3DSPIRAL\\_V20\\_GE|False|False|ASL\\_3DSPIRAL\\_V20\\_GE\\_MeanPerf|Sp3d1|('ORIGINAL', 'PRIMARY', 'M', 'ND')|1.3.12.2.1107.5.2.43.66044.2018041814445154291576986.0.0.0\n104059|10762|fmriprep125|0.1.2\\_1.2.5|fmriprep\\_SDK\\_010762|2019-04-15 20:45:24.774000+00:00|63361|failed|5c756339ba2580002c38d5df|DTI\\_MultiShell\\_117dir\\_15.nii.gz|1400|1400|118|-1|3.027|0.0828|DTI\\_MultiShell\\_117dir|False|False|DTI\\_MultiShell\\_117dir|ep\\_b5#1|('ORIGINAL', 'PRIMARY', 'DIFFUSION', 'NONE', 'MB', 'ND', 'NORM', 'MOSAIC')|1.3.12.2.1107.5.2.43.66044.2018041814510448864779646.0.0.0\n104059|10762|fmriprep125|0.1.2\\_1.2.5|fmriprep\\_SDK\\_010762|2019-04-15 20:45:24.774000+00:00|63361|failed|5c756339ba2580002c38d5df|DTI\\_MultiShell\\_117dir\\_15.bvec|1400|1400|118|-1|3.027|0.0828|DTI\\_MultiShell\\_117dir|False|False|DTI\\_MultiShell\\_117dir|ep\\_b5#1|('ORIGINAL', 'PRIMARY', 'DIFFUSION', 'NONE', 'MB', 'ND', 'NORM', 'MOSAIC')|1.3.12.2.1107.5.2.43.66044.2018041814510448864779646.0.0.0\n104059|10762|fmriprep125|0.1.2\\_1.2.5|fmriprep\\_SDK\\_010762|2019-04-15 20:45:24.774000+00:00|63361|failed|5c756339ba2580002c38d5df|DTI\\_MultiShell\\_117dir\\_15.bval|1400|1400|118|-1|3.027|0.0828|DTI\\_MultiShell\\_117dir|False|False|DTI\\_MultiShell\\_117dir|ep\\_b5#1|('ORIGINAL', 'PRIMARY', 'DIFFUSION', 'NONE', 'MB', 'ND', 'NORM', 'MOSAIC')|1.3.12.2.1107.5.2.43.66044.2018041814510448864779646.0.0.0\n104059|10762|fmriprep125|0.1.2\\_1.2.5|fmriprep\\_SDK\\_010762|2019-04-15 20:45:24.774000+00:00|63361|failed|5c756339ba25800038398294|DTI\\_MultiShell\\_topup\\_ref\\_17.nii.gz|140|140|92|-1|3.027|0.0828|DTI\\_MultiShell\\_topup\\_ref|False|False|DTI\\_MultiShell\\_topup\\_ref|ep\\_b5#1|('ORIGINAL', 'PRIMARY', 'DIFFUSION', 'NONE', 'MB', 'ND', 'NORM')|1.3.12.2.1107.5.2.43.66044.2018041814573463580034910.0.0.0\n104059|10762|fmriprep125|0.1.2\\_1.2.5|fmriprep\\_SDK\\_010762|2019-04-15 20:45:24.774000+00:00|63361|failed|5c756339ba25800038398299|MPRAGE\\_TI1100\\_ipat2\\_2.nii.gz|256|192|160|-1|1.81|0.00345|MPRAGE\\_TI1100\\_ipat2|False|False|MPRAGE\\_TI1100\\_ipat2|\\_tfl3d1\\_16|('ORIGINAL', 'PRIMARY', 'M', 'ND', 'NORM')|1.3.12.2.1107.5.2.43.66044.2018041814150078639280942.0.0.0\n104059|10762|fmriprep125|0.1.2\\_1.2.5|fmriprep\\_SDK\\_010762|2019-04-15 20:45:24.774000+00:00|63361|failed|5c756339ba2580003939a505|T2\\_sagittal\\_SPACE\\_3.nii.gz|256|256|176|-1|3.2|0.408|T2\\_sagittal\\_SPACE|False|False|T2\\_sagittal\\_SPACE|\\_spc\\_282ns|('ORIGINAL', 'PRIMARY', 'M', 'ND', 'NORM')|1.3.12.2.1107.5.2.43.66044.2018041814225838675681811.0.0.0\n104059|10762|fmriprep125|0.1.2\\_1.2.5|fmriprep\\_SDK\\_010762|2019-04-15 20:45:24.774000+00:00|63361|failed|5c75633aba2580002e38dd55|TOF\\_3D\\_multi-slab\\_R2\\_4.nii.gz|384|288|74|-1|0.022|0.00366|TOF\\_3D\\_multi-slab\\_R2|False|False|TOF\\_3D\\_multi-slab\\_R2|\\_fl3d1r\\_t70|('ORIGINAL', 'PRIMARY', 'M', 'ND', 'NORM')|1.3.12.2.1107.5.2.43.66044.2018041814230724412383000.0.0.0\n104059|10762|fmriprep125|0.1.2\\_1.2.5|fmriprep\\_SDK\\_010762|2019-04-15 20:45:24.774000+00:00|63361|failed|5c756339ba2580003839829a|TOF\\_3D\\_multi-slab\\_R2\\_5.nii.gz|142|384|1|-1|0.022|0.00366|TOF\\_3D\\_multi-slab\\_R2|False|False|TOF\\_3D\\_multi-slab\\_R2\\_MIP\\_SAG|\\_fl3d1r\\_t70|('ORIGINAL', 'PRIMARY', 'MIP', 'SAG', 'ND', 'NORM')|1.3.12.2.1107.5.2.43.66044.2018041814244435763483338.0.0.0\n104059|10762|fmriprep125|0.1.2\\_1.2.5|fmriprep\\_SDK\\_010762|2019-04-15 20:45:24.774000+00:00|63361|failed|5c75633aba2580003839829b|TOF\\_3D\\_multi-slab\\_R2\\_6.nii.gz|142|288|1|-1|0.022|0.00366|TOF\\_3D\\_multi-slab\\_R2|False|False|TOF\\_3D\\_multi-slab\\_R2\\_MIP\\_COR|\\_fl3d1r\\_t70|('ORIGINAL', 'PRIMARY', 'MIP', 'COR', 'ND', 'NORM')|1.3.12.2.1107.5.2.43.66044.2018041814244435762983336.0.0.0\n104059|10762|fmriprep125|0.1.2\\_1.2.5|fmriprep\\_SDK\\_010762|2019-04-15 20:45:24.774000+00:00|63361|failed|5c75633aba2580002a38c710|TOF\\_3D\\_multi-slab\\_R2\\_7.nii.gz|384|288|1|-1|0.022|0.00366|TOF\\_3D\\_multi-slab\\_R2|False|False|TOF\\_3D\\_multi-slab\\_R2\\_MIP\\_TRA|\\_fl3d1r\\_t70|('ORIGINAL', 'PRIMARY', 'MIP', 'TRA', 'ND', 'NORM')|1.3.12.2.1107.5.2.43.66044.2018041814244435762083334.0.0.0\n104059|10762|fmriprep125|0.1.2\\_1.2.5|fmriprep\\_SDK\\_010762|2019-04-15 20:45:24.774000+00:00|63361|failed|5c756339ba2580003939a504|B0map\\_8\\_e2.nii.gz|80|80|120|-1|0.58|0.00658|B0map|False|False|B0map|\\_fm2d2r|('ORIGINAL', 'PRIMARY', 'M', 'ND', 'NORM')|1.3.12.2.1107.5.2.43.66044.2018041814245128954183710.0.0.0\n104059|10762|fmriprep125|0.1.2\\_1.2.5|fmriprep\\_SDK\\_010762|2019-04-15 20:45:24.774000+00:00|63361|failed|5c756339ba2580003939a504|B0map\\_8\\_e1.nii.gz|80|80|120|-1|0.58|0.00412|B0map|False|False|B0map|\\_fm2d2r|('ORIGINAL', 'PRIMARY', 'M', 'ND', 'NORM')|1.3.12.2.1107.5.2.43.66044.2018041814245128954183710.0.0.0\n104059|10762|fmriprep125|0.1.2\\_1.2.5|fmriprep\\_SDK\\_010762|2019-04-15 20:45:24.774000+00:00|63361|failed|5c756339ba2580002c38d5e0|B0map\\_9\\_ph.nii.gz|80|80|60|-1|0.58|0.00658|B0map|False|False|B0map|\\_fm2d2r|('ORIGINAL', 'PRIMARY', 'P', 'ND')|1.3.12.2.1107.5.2.43.66044.2018041814245128955483711.0.0.0\n104059|10762|fmriprep125|0.1.2\\_1.2.5|fmriprep\\_SDK\\_010762|2019-04-16 16:27:02.664000+00:00|15829|failed|5c75633aba2580002d3902e6|Localizer\\_1\\_i00003.nii.gz|512|512|3|-1|0.0086|0.004|Localizer|False|False|Localizer|\\_fl2d1|('ORIGINAL', 'PRIMARY', 'M', 'ND', 'NORM')|1.3.12.2.1107.5.2.43.66044.2018041814140178131880096.0.0.0\n104059|10762|fmriprep125|0.1.2\\_1.2.5|fmriprep\\_SDK\\_010762|2019-04-16 16:27:02.664000+00:00|15829|failed|5c75633aba2580002d3902e6|Localizer\\_1\\_i00002.nii.gz|512|512|3|-1|0.0086|0.004|Localizer|False|False|Localizer|\\_fl2d1|('ORIGINAL', 'PRIMARY', 'M', 'ND', 'NORM')|1.3.12.2.1107.5.2.43.66044.2018041814140178131880096.0.0.0\n104059|10762|fmriprep125|0.1.2\\_1.2.5|fmriprep\\_SDK\\_010762|2019-04-16 16:27:02.664000+00:00|15829|failed|5c75633aba2580002d3902e6|Localizer\\_1\\_i00001.nii.gz|512|512|3|-1|0.0086|0.004|Localizer|False|False|Localizer|\\_fl2d1|('ORIGINAL', 'PRIMARY', 'M', 'ND', 'NORM')|1.3.12.2.1107.5.2.43.66044.2018041814140178131880096.0.0.0\n104059|10762|fmriprep125|0.1.2\\_1.2.5|fmriprep\\_SDK\\_010762|2019-04-16 16:27:02.664000+00:00|15829|failed|5c756339ba25800038398297|restingBOLD\\_mb6\\_1200\\_10.nii.gz|448|448|1200|-1|0.5|0.025|restingBOLD\\_mb6\\_1200|False|False|restingBOLD\\_mb6\\_1200|epfid2d1\\_64|('ORIGINAL', 'PRIMARY', 'M', 'MB', 'ND', 'NORM', 'MOSAIC')|1.3.12.2.1107.5.2.43.66044.201804181426368296184317.0.0.0\n104059|10762|fmriprep125|0.1.2\\_1.2.5|fmriprep\\_SDK\\_010762|2019-04-16 16:27:02.664000+00:00|15829|failed|5c756339ba25800038398298|bbl1\\_restbold1\\_124mb\\_11.nii.gz|448|448|124|-1|3|0.032|bbl1\\_restbold1\\_124mb|False|False|bbl1\\_restbold1\\_124mb|epfid2d1\\_64|('ORIGINAL', 'PRIMARY', 'M', 'ND', 'NORM', 'MOSAIC')|1.3.12.2.1107.5.2.43.66044.2018041814370267454559619.0.0.0\n104059|10762|fmriprep125|0.1.2\\_1.2.5|fmriprep\\_SDK\\_010762|2019-04-16 16:27:02.664000+00:00|15829|failed|5c756339ba2580003939a503|ASL\\_3DSPIRAL\\_V20\\_GE\\_12\\_Eq\\_1.nii.gz|64|64|64|-1|0.022|0.01003| |False|False| | |()| \n104059|10762|fmriprep125|0.1.2\\_1.2.5|fmriprep\\_SDK\\_010762|2019-04-16 16:27:02.664000+00:00|15829|failed|5c756339ba2580003939a503|ASL\\_3DSPIRAL\\_V20\\_GE\\_12.nii.gz|64|64|64|-1|4.6255|0.01003|ASL\\_3DSPIRAL\\_V20\\_GE|False|False|ASL\\_3DSPIRAL\\_V20\\_GE\\_M0|Sp3d1|('ORIGINAL', 'PRIMARY', 'M', 'ND')|1.3.12.2.1107.5.2.43.66044.2018041814445154289476985.0.0.0\n104059|10762|fmriprep125|0.1.2\\_1.2.5|fmriprep\\_SDK\\_010762|2019-04-16 16:27:02.664000+00:00|15829|failed|5c756339ba25800038398296|ASL\\_3DSPIRAL\\_V20\\_GE\\_13.nii.gz|64|64|2560|-1|4.6255|0.01003|ASL\\_3DSPIRAL\\_V20\\_GE|False|False|ASL\\_3DSPIRAL\\_V20\\_GE\\_ASL|Sp3d1|('ORIGINAL', 'PRIMARY', 'M', 'ND')|1.3.12.2.1107.5.2.43.66044.2018041814445430648677051.0.0.0\n104059|10762|fmriprep125|0.1.2\\_1.2.5|fmriprep\\_SDK\\_010762|2019-04-16 16:27:02.664000+00:00|15829|failed|5c756339ba2580002e38dd54|ASL\\_3DSPIRAL\\_V20\\_GE\\_14.nii.gz|64|64|32|-1|4.6255|0.01003|ASL\\_3DSPIRAL\\_V20\\_GE|False|False|ASL\\_3DSPIRAL\\_V20\\_GE\\_MeanPerf|Sp3d1|('ORIGINAL', 'PRIMARY', 'M', 'ND')|1.3.12.2.1107.5.2.43.66044.2018041814445154291576986.0.0.0\n104059|10762|fmriprep125|0.1.2\\_1.2.5|fmriprep\\_SDK\\_010762|2019-04-16 16:27:02.664000+00:00|15829|failed|5c756339ba2580002c38d5df|DTI\\_MultiShell\\_117dir\\_15.nii.gz|1400|1400|118|-1|3.027|0.0828|DTI\\_MultiShell\\_117dir|False|False|DTI\\_MultiShell\\_117dir|ep\\_b5#1|('ORIGINAL', 'PRIMARY', 'DIFFUSION', 'NONE', 'MB', 'ND', 'NORM', 'MOSAIC')|1.3.12.2.1107.5.2.43.66044.2018041814510448864779646.0.0.0\n104059|10762|fmriprep125|0.1.2\\_1.2.5|fmriprep\\_SDK\\_010762|2019-04-16 16:27:02.664000+00:00|15829|failed|5c756339ba2580002c38d5df|DTI\\_MultiShell\\_117dir\\_15.bvec|1400|1400|118|-1|3.027|0.0828|DTI\\_MultiShell\\_117dir|False|False|DTI\\_MultiShell\\_117dir|ep\\_b5#1|('ORIGINAL', 'PRIMARY', 'DIFFUSION', 'NONE', 'MB', 'ND', 'NORM', 'MOSAIC')|1.3.12.2.1107.5.2.43.66044.2018041814510448864779646.0.0.0\n104059|10762|fmriprep125|0.1.2\\_1.2.5|fmriprep\\_SDK\\_010762|2019-04-16 16:27:02.664000+00:00|15829|failed|5c756339ba2580002c38d5df|DTI\\_MultiShell\\_117dir\\_15.bval|1400|1400|118|-1|3.027|0.0828|DTI\\_MultiShell\\_117dir|False|False|DTI\\_MultiShell\\_117dir|ep\\_b5#1|('ORIGINAL', 'PRIMARY', 'DIFFUSION', 'NONE', 'MB', 'ND', 'NORM', 'MOSAIC')|1.3.12.2.1107.5.2.43.66044.2018041814510448864779646.0.0.0\n104059|10762|fmriprep125|0.1.2\\_1.2.5|fmriprep\\_SDK\\_010762|2019-04-16 16:27:02.664000+00:00|15829|failed|5c756339ba25800038398294|DTI\\_MultiShell\\_topup\\_ref\\_17.nii.gz|140|140|92|-1|3.027|0.0828|DTI\\_MultiShell\\_topup\\_ref|False|False|DTI\\_MultiShell\\_topup\\_ref|ep\\_b5#1|('ORIGINAL', 'PRIMARY', 'DIFFUSION', 'NONE', 'MB', 'ND', 'NORM')|1.3.12.2.1107.5.2.43.66044.2018041814573463580034910.0.0.0\n104059|10762|fmriprep125|0.1.2\\_1.2.5|fmriprep\\_SDK\\_010762|2019-04-16 16:27:02.664000+00:00|15829|failed|5c756339ba25800038398299|MPRAGE\\_TI1100\\_ipat2\\_2.nii.gz|256|192|160|-1|1.81|0.00345|MPRAGE\\_TI1100\\_ipat2|False|False|MPRAGE\\_TI1100\\_ipat2|\\_tfl3d1\\_16|('ORIGINAL', 'PRIMARY', 'M', 'ND', 'NORM')|1.3.12.2.1107.5.2.43.66044.2018041814150078639280942.0.0.0\n104059|10762|fmriprep125|0.1.2\\_1.2.5|fmriprep\\_SDK\\_010762|2019-04-16 16:27:02.664000+00:00|15829|failed|5c756339ba2580003939a505|T2\\_sagittal\\_SPACE\\_3.nii.gz|256|256|176|-1|3.2|0.408|T2\\_sagittal\\_SPACE|False|False|T2\\_sagittal\\_SPACE|\\_spc\\_282ns|('ORIGINAL', 'PRIMARY', 'M', 'ND', 'NORM')|1.3.12.2.1107.5.2.43.66044.2018041814225838675681811.0.0.0\n104059|10762|fmriprep125|0.1.2\\_1.2.5|fmriprep\\_SDK\\_010762|2019-04-16 16:27:02.664000+00:00|15829|failed|5c75633aba2580002e38dd55|TOF\\_3D\\_multi-slab\\_R2\\_4.nii.gz|384|288|74|-1|0.022|0.00366|TOF\\_3D\\_multi-slab\\_R2|False|False|TOF\\_3D\\_multi-slab\\_R2|\\_fl3d1r\\_t70|('ORIGINAL', 'PRIMARY', 'M', 'ND', 'NORM')|1.3.12.2.1107.5.2.43.66044.2018041814230724412383000.0.0.0\n104059|10762|fmriprep125|0.1.2\\_1.2.5|fmriprep\\_SDK\\_010762|2019-04-16 16:27:02.664000+00:00|15829|failed|5c756339ba2580003839829a|TOF\\_3D\\_multi-slab\\_R2\\_5.nii.gz|142|384|1|-1|0.022|0.00366|TOF\\_3D\\_multi-slab\\_R2|False|False|TOF\\_3D\\_multi-slab\\_R2\\_MIP\\_SAG|\\_fl3d1r\\_t70|('ORIGINAL', 'PRIMARY', 'MIP', 'SAG', 'ND', 'NORM')|1.3.12.2.1107.5.2.43.66044.2018041814244435763483338.0.0.0\n104059|10762|fmriprep125|0.1.2\\_1.2.5|fmriprep\\_SDK\\_010762|2019-04-16 16:27:02.664000+00:00|15829|failed|5c75633aba2580003839829b|TOF\\_3D\\_multi-slab\\_R2\\_6.nii.gz|142|288|1|-1|0.022|0.00366|TOF\\_3D\\_multi-slab\\_R2|False|False|TOF\\_3D\\_multi-slab\\_R2\\_MIP\\_COR|\\_fl3d1r\\_t70|('ORIGINAL', 'PRIMARY', 'MIP', 'COR', 'ND', 'NORM')|1.3.12.2.1107.5.2.43.66044.2018041814244435762983336.0.0.0\n104059|10762|fmriprep125|0.1.2\\_1.2.5|fmriprep\\_SDK\\_010762|2019-04-16 16:27:02.664000+00:00|15829|failed|5c75633aba2580002a38c710|TOF\\_3D\\_multi-slab\\_R2\\_7.nii.gz|384|288|1|-1|0.022|0.00366|TOF\\_3D\\_multi-slab\\_R2|False|False|TOF\\_3D\\_multi-slab\\_R2\\_MIP\\_TRA|\\_fl3d1r\\_t70|('ORIGINAL', 'PRIMARY', 'MIP', 'TRA', 'ND', 'NORM')|1.3.12.2.1107.5.2.43.66044.2018041814244435762083334.0.0.0\n104059|10762|fmriprep125|0.1.2\\_1.2.5|fmriprep\\_SDK\\_010762|2019-04-16 16:27:02.664000+00:00|15829|failed|5c756339ba2580003939a504|B0map\\_8\\_e2.nii.gz|80|80|120|-1|0.58|0.00658|B0map|False|False|B0map|\\_fm2d2r|('ORIGINAL', 'PRIMARY', 'M', 'ND', 'NORM')|1.3.12.2.1107.5.2.43.66044.2018041814245128954183710.0.0.0\n104059|10762|fmriprep125|0.1.2\\_1.2.5|fmriprep\\_SDK\\_010762|2019-04-16 16:27:02.664000+00:00|15829|failed|5c756339ba2580003939a504|B0map\\_8\\_e1.nii.gz|80|80|120|-1|0.58|0.00412|B0map|False|False|B0map|\\_fm2d2r|('ORIGINAL', 'PRIMARY', 'M', 'ND', 'NORM')|1.3.12.2.1107.5.2.43.66044.2018041814245128954183710.0.0.0\n104059|10762|fmriprep125|0.1.2\\_1.2.5|fmriprep\\_SDK\\_010762|2019-04-16 16:27:02.664000+00:00|15829|failed|5c756339ba2580002c38d5e0|B0map\\_9\\_ph.nii.gz|80|80|60|-1|0.58|0.00658|B0map|False|False|B0map|\\_fm2d2r|('ORIGINAL', 'PRIMARY', 'P', 'ND')|1.3.12.2.1107.5.2.43.66044.2018041814245128955483711.0.0.0\n86486|11196|fmriprep125|0.1.2\\_1.2.5|fmriprep125 04/05/2019 14:59:38|2019-04-05 19:00:04.294000+00:00|73752452|complete|5c93c0a6f546b6002abdfe43|1.3.12.2.1107.5.2.43.66044.30000019032116274975300004569.nii.gz|64|64|2560|-1|4|0.01003|ASL\\_3DSPIRAL\\_V20\\_GE|False|False|ASL\\_3DSPIRAL\\_V20\\_GE\\_ASL|Sp3d1|('ORIGINAL', 'PRIMARY', 'M', 'ND')|1.3.12.2.1107.5.2.43.66044.30000019032116274975300004569\n86486|11196|fmriprep125|0.1.2\\_1.2.5|fmriprep125 04/05/2019 14:59:38|2019-04-05 19:00:04.294000+00:00|73752452|complete|5c93be6df546b6002cbe1b65|1.3.12.2.1107.5.2.43.66044.30000019032116274975300002008\\_Eq\\_1.nii.gz|64|64|64|-1| | | |False|False| | |()| \n86486|11196|fmriprep125|0.1.2\\_1.2.5|fmriprep125 04/05/2019 14:59:38|2019-04-05 19:00:04.294000+00:00|73752452|complete|5c93be6df546b6002cbe1b65|1.3.12.2.1107.5.2.43.66044.30000019032116274975300002008.nii.gz|64|64|64|-1|4|0.01003|ASL\\_3DSPIRAL\\_V20\\_GE|False|False|ASL\\_3DSPIRAL\\_V20\\_GE\\_M0|Sp3d1|('ORIGINAL', 'PRIMARY', 'M', 'ND')|1.3.12.2.1107.5.2.43.66044.30000019032116274975300002008\n86486|11196|fmriprep125|0.1.2\\_1.2.5|fmriprep125 04/05/2019 14:59:38|2019-04-05 19:00:04.294000+00:00|73752452|complete|5c93c0b0f546b6002fbf3a7e|1.3.12.2.1107.5.2.43.66044.30000019032116274975300004602.nii.gz|64|64|32|-1|4|0.01003|ASL\\_3DSPIRAL\\_V20\\_GE|False|False|ASL\\_3DSPIRAL\\_V20\\_GE\\_MeanPerf|Sp3d1|('ORIGINAL', 'PRIMARY', 'M', 'ND')|1.3.12.2.1107.5.2.43.66044.30000019032116274975300004602\n86486|11196|fmriprep125|0.1.2\\_1.2.5|fmriprep125 04/05/2019 14:59:38|2019-04-05 19:00:04.294000+00:00|73752452|complete|5c93bcebf546b6002cbe1b61|1.3.12.2.1107.5.2.43.66044.30000019032116274975300000556\\_e2.nii.gz|80|80|120|-1|0.58|0.00658|B0map|False|False|B0map|\\_fm2d2r|('ORIGINAL', 'PRIMARY', 'M', 'ND', 'NORM')|1.3.12.2.1107.5.2.43.66044.30000019032116274975300000556\n86486|11196|fmriprep125|0.1.2\\_1.2.5|fmriprep125 04/05/2019 14:59:38|2019-04-05 19:00:04.294000+00:00|73752452|complete|5c93bcebf546b6002cbe1b61|1.3.12.2.1107.5.2.43.66044.30000019032116274975300000556\\_e1.nii.gz|80|80|120|-1|0.58|0.00412|B0map|False|False|B0map|\\_fm2d2r|('ORIGINAL', 'PRIMARY', 'M', 'ND', 'NORM')|1.3.12.2.1107.5.2.43.66044.30000019032116274975300000556\n86486|11196|fmriprep125|0.1.2\\_1.2.5|fmriprep125 04/05/2019 14:59:38|2019-04-05 19:00:04.294000+00:00|73752452|complete|5c93bcfbf546b6002cbe1b63|1.3.12.2.1107.5.2.43.66044.30000019032116274975300000617\\_e2\\_ph.nii.gz|80|80|60|-1|0.58|0.00658|B0map|False|False|B0map|\\_fm2d2r|('ORIGINAL', 'PRIMARY', 'P', 'ND')|1.3.12.2.1107.5.2.43.66044.30000019032116274975300000617\n86486|11196|fmriprep125|0.1.2\\_1.2.5|fmriprep125 04/05/2019 14:59:38|2019-04-05 19:00:04.294000+00:00|73752452|complete|5c93c0f3f546b6002abdfe45|1.3.12.2.1107.5.2.43.66044.30000019032116274975300004721.nii.gz|1400|1400|118|-1|3.027|0.0828|DTI\\_MultiShell\\_117dir|False|False|DTI\\_MultiShell\\_117dir|ep\\_b5#1|('ORIGINAL', 'PRIMARY', 'DIFFUSION', 'NONE', 'MB', 'ND', 'NORM', 'MOSAIC')|1.3.12.2.1107.5.2.43.66044.30000019032116274975300004721\n86486|11196|fmriprep125|0.1.2\\_1.2.5|fmriprep125 04/05/2019 14:59:38|2019-04-05 19:00:04.294000+00:00|73752452|complete|5c93c0f3f546b6002abdfe45|1.3.12.2.1107.5.2.43.66044.30000019032116274975300004721.bvec|1400|1400|118|-1|3.027|0.0828|DTI\\_MultiShell\\_117dir|False|False|DTI\\_MultiShell\\_117dir|ep\\_b5#1|('ORIGINAL', 'PRIMARY', 'DIFFUSION', 'NONE', 'MB', 'ND', 'NORM', 'MOSAIC')|1.3.12.2.1107.5.2.43.66044.30000019032116274975300004721\n86486|11196|fmriprep125|0.1.2\\_1.2.5|fmriprep125 04/05/2019 14:59:38|2019-04-05 19:00:04.294000+00:00|73752452|complete|5c93c0f3f546b6002abdfe45|1.3.12.2.1107.5.2.43.66044.30000019032116274975300004721.bval|1400|1400|118|-1|3.027|0.0828|DTI\\_MultiShell\\_117dir|False|False|DTI\\_MultiShell\\_117dir|ep\\_b5#1|('ORIGINAL', 'PRIMARY', 'DIFFUSION', 'NONE', 'MB', 'ND', 'NORM', 'MOSAIC')|1.3.12.2.1107.5.2.43.66044.30000019032116274975300004721\n86486|11196|fmriprep125|0.1.2\\_1.2.5|fmriprep125 04/05/2019 14:59:38|2019-04-05 19:00:04.294000+00:00|73752452|complete|5c93c221f546b6002dbe38b3|1.3.12.2.1107.5.2.43.66044.30000019032116274975300005919.nii.gz|140|140|92|-1|3.027|0.0828|DTI\\_MultiShell\\_topup\\_ref|False|False|DTI\\_MultiShell\\_topup\\_ref|ep\\_b5#1|('ORIGINAL', 'PRIMARY', 'DIFFUSION', 'NONE', 'MB', 'ND', 'NORM')|1.3.12.2.1107.5.2.43.66044.30000019032116274975300005919\n86486|11196|fmriprep125|0.1.2\\_1.2.5|fmriprep125 04/05/2019 14:59:38|2019-04-05 19:00:04.294000+00:00|73752452|complete|5c93bc57f546b6002ebe99b0|1.3.12.2.1107.5.2.43.66044.30000019032116274975300000016\\_i00003.nii.gz|512|512|3|-1|0.0086|0.004|Localizer|False|False|Localizer|\\_fl2d1|('ORIGINAL', 'PRIMARY', 'M', 'ND', 'NORM')|1.3.12.2.1107.5.2.43.66044.30000019032116274975300000016\n86486|11196|fmriprep125|0.1.2\\_1.2.5|fmriprep125 04/05/2019 14:59:38|2019-04-05 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This long table now gives you the added option of filtering by sequence specific preconditions, e.g. any subject with a T1w image should have an fMRIPrep run:\n```\n# Tidy R syntax:\ndf %>% \n  filter(str_detect(tolower(gearName), 'fmriprep')) %>% \n  filter(str_detect(runStatus, 'complete')) %>%\n  filter(str_detect(tolower(protocolName), 't1w'))\n```\n\n# Conclusion\n\n`fw-gear-audit` allows users to get a tabular, indexable, searchable overview of the progress of gears run on Flywheel.\n\nPlease submit any bug reports, feature requests, or questions to the [issues page](https://github.com/PennBBL/fw-gear-audit/issues).",
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