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        "author": "Fabian Peter Hammerle",
        "author_email": "fabian@hammerle.me",
        "bugtrack_url": null,
        "classifiers": [
            "Development Status :: 3 - Alpha",
            "Intended Audience :: Healthcare Industry",
            "Intended Audience :: Science/Research",
            "Programming Language :: Python :: 3.5",
            "Programming Language :: Python :: 3.6",
            "Programming Language :: Python :: 3.7",
            "Topic :: Scientific/Engineering :: Information Analysis",
            "Topic :: Scientific/Engineering :: Medical Science Apps.",
            "Topic :: Utilities"
        ],
        "description": "freesurfer-volume-reader\n========================\n\n.. image:: https://travis-ci.org/fphammerle/freesurfer-volume-reader.svg?branch=master\n   :target: https://travis-ci.org/fphammerle/freesurfer-volume-reader\n.. image:: https://coveralls.io/repos/github/fphammerle/freesurfer-volume-reader/badge.svg?branch=master\n   :target: https://coveralls.io/github/fphammerle/freesurfer-volume-reader?branch=master\n.. image:: https://img.shields.io/pypi/v/freesurfer-volume-reader.svg\n   :target: https://pypi.org/project/freesurfer-volume-reader/#history\n.. image:: https://img.shields.io/pypi/pyversions/freesurfer-volume-reader.svg\n   :target: https://pypi.org/project/freesurfer-volume-reader/\n\nPython script & library to read hippocampal subfield volumes computed by\nFreesurfer & ASHS\n\n-  Freesurfer\n   https://surfer.nmr.mgh.harvard.edu/fswiki/HippocampalSubfields\n-  ASHS https://sites.google.com/site/hipposubfields/home\n\nInstall\n-------\n\n.. code:: sh\n\n   pip3 install --user freesurfer-volume-reader\n   freesurfer-volume-reader --help\n\nReleases follow the `semantic versioning <https://semver.org/>`__\nscheme.\n\nUsage\n-----\n\nFreesurfer\n~~~~~~~~~~\n\n.. code:: sh\n\n   export SUBJECTS_DIR=/my/freesurfer/subjects\n   freesurfer-volume-reader\n\nor\n\n.. code:: sh\n\n   freesurfer-volume-reader /my/freesurfer/subjects\n   freesurfer-volume-reader /my/freesurfer/subjects /other/freesurfer/subjects\n\nor\n\n.. code:: python\n\n   from freesurfer_volume_reader import freesurfer\n\n   for volume_file in freesurfer.HippocampalSubfieldsVolumeFile.find('/my/freesurfer/subjects'):\n       print(volume_file.subject, volume_file.hemisphere, volume_file.analysis_id)\n       print(volume_file.read_volumes_mm3())\n       print(volume_file.read_volumes_dataframe())\n\nASHS\n~~~~\n\n.. code:: sh\n\n   export SUBJECTS_DIR=/my/ashs/subjects\n   freesurfer-volume-reader --source-types ashs\n\nor\n\n.. code:: sh\n\n   freesurfer-volume-reader --source-types ashs -- /my/ashs/subjects\n   freesurfer-volume-reader --source-types ashs -- /my/ashs/subjects /other/ashs/subjects\n\nor\n\n.. code:: python\n\n   from freesurfer_volume_reader import ashs\n\n   for volume_file in ashs.HippocampalSubfieldsVolumeFile.find('/my/ashs/subjects'):\n       print(volume_file.subject, volume_file.hemisphere, volume_file.correction)\n       print(volume_file.read_volumes_mm3())\n       print(volume_file.read_volumes_dataframe())\n\nIntracranial Volume\n^^^^^^^^^^^^^^^^^^^\n\n.. code:: python\n\n   from freesurfer_volume_reader import ashs\n\n   for volume_file in ashs.IntracranialVolumeFile.find('/my/ashs/subjects'):\n       print(volume_file.subject)\n       print(volume_file.read_volume_mm3())\n       print(volume_file.read_volume_series())\n\nFreesurfer & ASHS\n~~~~~~~~~~~~~~~~~\n\n.. code:: sh\n\n   freesurfer-volume-reader --source-types ashs freesurfer-hipposf -- /my/subjects\n   freesurfer-volume-reader --source-types ashs freesurfer-hipposf -- /my/ashs/subjects /my/freesurfer/subjects /other/subjects\n\nTests\n-----\n\n.. code:: sh\n\n   pip3 install --user pipenv\n   git clone https://github.com/fphammerle/freesurfer-volume-reader.git\n   cd freesurfer-volume-reader\n   pipenv run pylint freesurfer_volume_reader\n   pipenv run pytest\n\n\n",
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