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        "author": "Desai Trunil Shamrao",
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        "description": "fluxpyt\n========\n\nThis package is developed to perform stationary 13C metabolic flux analysis \ncalculations for estimation of intracellular flux distribution.\nFluxPyt is written in python3. The anaconda package list is provided in \nthe requirements.txt file.\n\nThe package was developed as a part of PhD work of Desai Trunil Shamrao at:\n\nSystems Biology for Biofuels Group\nGroup Leader, Dr. Shireesh Srivastava\nInternational Centre for Genetic Engineering and Biotechnology (ICGEB),\nAruna Asaf Ali Marg,\nNew Delhi.\n\n\nAcknowledgements\n================\nThe PhD fellowship of Trunil is funded by the Council for Scientific \nand Industrial Research (CSIR).\nThe project is funded by Department of Biotechnology (DBT)\n\nThe author specially thanks Ahmad for being there to discuss issues and to \nhelp get rid of few bugs.\n\n\n\nInstallation ( for Windows):\n============================\nThese directions are written for Windows users who are not familiar with Python programming.\n\nDownload and install Anaconda distribution (version 3.4.4.0 was used in this tutorial).\n\nOpen an Anaconda command prompt.\nClick on Windows start button.\nType 'anaconda'. A link to open Anaconda command promt will be shown.\n\nType following commands to create new environment in Anaconda for running fluxpyt:\n\n\tconda create -n fluxpyt_env python=3.6.1 numpy=1.12.1 scipy=0.19.0 sympy=1.0\n\n\tactivate fluxpyt_env\n\n\tconda install -c conda-forge lmfit\n\n\tconda install -c sjpfenninger glpk\n\n\tconda install csvkit=0.9.1\n\n\tconda install matplotlib=2.0.2\n\n\tconda install pandas=0.20.1\n\n\tconda install spyder\n\n\tpip install fluxpyt\n\n\n\n=========\nChangelog\n=========\nVersion 0.1.4\n=============\n-Cleared code to largely follow PEP 8 guidelines.\n\n\nVersion 0.1.5\n=============\n-Lower bounds and upper bounds of each reaction can be assigned by user. Note: User defined bounds will affect the final solution only if they affect the bounds of free fluxes.\n-Initial values of free flux parameters selected ome by one by performing flux variability for each free flux taking into account the previously selected value for other free fluxes.\n\nVersion 0.1.4\n=============\n-Minor changes\n\nVersion 0.1.3\n=============\n-Changed installation directions in README.rst\n\nVersion 0.1.2\n=============\n-Changed installation directions in README.rst\n\nVersion 0.1.1\n==============\n-Project setup created by Pyscaffold.\n\n-Generated documentation using Sphinx\n\nVersion 0.1\n============\n-Initial release\n\n\n\n\n\nNote\n====\n\nThis project has been set up using PyScaffold 2.5.8. For details and usage\ninformation on PyScaffold see http://pyscaffold.readthedocs.org/.\n\n\n",
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