{ "info": { "author": "olgabot", "author_email": "olgabot@ucsd.edu", "bugtrack_url": null, "classifiers": [ "License :: OSI Approved :: BSD License", "Operating System :: MacOS", "Operating System :: Microsoft :: Windows", "Operating System :: POSIX", "Operating System :: Unix", "Programming Language :: Python :: 2.7", "Topic :: Multimedia :: Graphics", "Topic :: Scientific/Engineering :: Bio-Informatics", "Topic :: Scientific/Engineering :: Medical Science Apps.", "Topic :: Scientific/Engineering :: Visualization" ], "description": "flotilla\n========\n\n``flotilla`` is a Python package for visualizing transcriptome (RNA expression) data from hundreds of\nsamples. We include utilities to perform common tasks on these large data matrices, including:\n \n* Dimensionality reduction\n* Classification and Regression\n* Outlier detection\n* Network graphs from covariance\n* Hierarchical clustering\n \nAnd common tasks for biological data including:\n\n* Renaming database features to gene symbols\n* Coloring/marking samples based on experimental phenotype\n* Removing poor-quality samples (technical outliers)\n \n \nFinally, ``flotilla`` is a platform for active collaboration between bioinformatics scientists and \ntraditional \"wet lab\" scientists. Leveraging `interactive widgets `_ \nin the `IPython Notebook `_, \nwe have created tools for simple and streamlined data exploration including:\n\n* Subsetting sample groups and feature (genes/splicing events) groups\n* Dynamically adjusting parameters for analysis\n* Integrating external lists of features from the web or local files\n\nThese empower the \"wet lab\" scientists to ask questions on their own and gives bioniformatics\nscientists a platform and share their analysis tools.\n\n\nWhat flotilla is **not**\n-----------------------\n\n``flotilla`` is not a genomics pipeline. We expect that you have already generated\ndata tables for gene expression, isoform expression and metadata. ``flotilla`` only makes \nit easy to integrate all those data parts together once you have the pieces.\n", "description_content_type": null, "docs_url": null, "download_url": "UNKNOWN", "downloads": { "last_day": -1, "last_month": -1, "last_week": -1 }, "home_page": "http://github.com/YeoLab/flotilla", "keywords": null, "license": "3-Clause BSD", "maintainer": null, "maintainer_email": null, "name": "flotilla", "package_url": "https://pypi.org/project/flotilla/", "platform": "UNKNOWN", "project_url": "https://pypi.org/project/flotilla/", "project_urls": { "Download": "UNKNOWN", "Homepage": "http://github.com/YeoLab/flotilla" }, "release_url": "https://pypi.org/project/flotilla/0.3.2/", "requires_dist": null, "requires_python": null, "summary": "Embark on a journey of single-cell data exploration.", "version": "0.3.2" }, "last_serial": 2269384, "releases": { "0.1.0": [ { 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