{
    "info": {
        "author": "Eduard Trott",
        "author_email": "etrott@redhat.com",
        "bugtrack_url": null,
        "classifiers": [
            "License :: OSI Approved :: GNU General Public License v3 (GPLv3)",
            "Natural Language :: English",
            "Programming Language :: Python :: 2.7",
            "Topic :: Office/Business",
            "Topic :: Utilities"
        ],
        "description": ".. image:: https://travis-ci.org/maybelinot/findltr.svg\n   :target: https://travis-ci.org/maybelinot/findltr\n\n.. image:: https://coveralls.io/repos/maybelinot/findltr/badge.svg\n   :target: https://coveralls.io/r/maybelinot/findltr\n\n\n======================\n    findltr\n======================\n\nCommand-line tool for de novo identification of LTR retrotransposons.\n\nRequirements\n============\n+  Basic Local Alignment Search Tool (`BLAST`_)::\n\n   $ sudo apt-get install ncbi-blast+\n\nInstallations\n=============\nExample install, using VirtualEnv::\n\n    # install/use python virtual environment\n    virtualenv ~/virtenv_scratch --no-site-packages\n\n    # activate the virtual environment\n    source ~/virtenv_scratch/bin/activate\n\n    # upgrade pip in the new virtenv\n    pip install -U pip setuptools\n\n    # install this package in DEVELOPMENT mode\n    python setup.py develop\n\n    # or simply install\n    # python setup.py install\n\n\nOptions\n~~~~~~~\n\nThe list of available options:\n\nGeneral\n-------\n\n--input\n    Input **\\*.fasta** or **\\*.fa** file\n\n--output\n    Output **\\*.gff** file\n\nSearch parameters\n-----------------\n+----------------+---------------------------------+----------+\n|     Option     | Description                     | Default  |\n+================+=================================+==========+\n| --algorithm    | Algorithm, [kmp|salcp|original] | original |\n+----------------+---------------------------------+----------+\n| --pattern_len  | Length of pattern               | 20       |    \n+----------------+---------------------------------+----------+\n| --min_distance | Minimal distance between LTRs   | 1000     |\n+----------------+---------------------------------+----------+\n|--max_distance  | Maximal distance between LTRs   | 20000    |\n+----------------+---------------------------------+----------+\n|--min_ltr_len   | Minimal length of LTRs          | 100      |\n+----------------+---------------------------------+----------+\n|--max_ltr_len   | Maximal length of LTRs          | 1000     |\n+----------------+---------------------------------+----------+\n\n\nOther\n-----\n\n--verbose\n    Include more details \n--debug\n    Turn on debugging output, do not catch exceptions\n\nSee ``findltr --help`` for complete list of available options.\n\n.. _BLAST: http://www.ncbi.nlm.nih.gov/books/NBK279690/",
        "description_content_type": null,
        "docs_url": null,
        "download_url": "https://github.com/maybelinot/findltr/archive/master.zip",
        "downloads": {
            "last_day": -1,
            "last_month": -1,
            "last_week": -1
        },
        "home_page": "https://github.com/maybelinot/findltr",
        "keywords": "information",
        "license": "GPLv2",
        "maintainer": null,
        "maintainer_email": null,
        "name": "findltr",
        "package_url": "https://pypi.org/project/findltr/",
        "platform": "UNKNOWN",
        "project_url": "https://pypi.org/project/findltr/",
        "project_urls": {
            "Download": "https://github.com/maybelinot/findltr/archive/master.zip",
            "Homepage": "https://github.com/maybelinot/findltr"
        },
        "release_url": "https://pypi.org/project/findltr/0.0.2/",
        "requires_dist": null,
        "requires_python": null,
        "summary": "Search for LTR retrotransposons.",
        "version": "0.0.2"
    },
    "last_serial": 1786452,
    "releases": {
        "0.0.1": [
            {
                "comment_text": "",
                "digests": {
                    "md5": "9eb2fe61d63f3e9bdf722b286112fb7a",
                    "sha256": "ea72e1773664df7807a538923eeabb3d078e79fa07c80e846ff42bc169c54c9e"
                },
                "downloads": -1,
                "filename": "findltr-0.0.1.tar.gz",
                "has_sig": false,
                "md5_digest": "9eb2fe61d63f3e9bdf722b286112fb7a",
                "packagetype": "sdist",
                "python_version": "source",
                "requires_python": null,
                "size": 7158,
                "upload_time": "2015-10-26T11:18:59",
                "url": "https://files.pythonhosted.org/packages/27/fa/af20873ede336630928c15a13883924464ca3bfb428319e4c055ab0bea89/findltr-0.0.1.tar.gz"
            }
        ],
        "0.0.2": [
            {
                "comment_text": "",
                "digests": {
                    "md5": "c3b97ca22c83649a89829f6935e0b77f",
                    "sha256": "a6f84d2fe35f9de0afcbf421044c1630cfea4fb55d105b2907590f924be6fea7"
                },
                "downloads": -1,
                "filename": "findltr-0.0.2.tar.gz",
                "has_sig": false,
                "md5_digest": "c3b97ca22c83649a89829f6935e0b77f",
                "packagetype": "sdist",
                "python_version": "source",
                "requires_python": null,
                "size": 7164,
                "upload_time": "2015-10-26T11:25:34",
                "url": "https://files.pythonhosted.org/packages/5b/45/b999d59695b46c56d31f858fd1e0c18a88c2f2dbcf783685e6a75ab41605/findltr-0.0.2.tar.gz"
            }
        ]
    },
    "urls": [
        {
            "comment_text": "",
            "digests": {
                "md5": "c3b97ca22c83649a89829f6935e0b77f",
                "sha256": "a6f84d2fe35f9de0afcbf421044c1630cfea4fb55d105b2907590f924be6fea7"
            },
            "downloads": -1,
            "filename": "findltr-0.0.2.tar.gz",
            "has_sig": false,
            "md5_digest": "c3b97ca22c83649a89829f6935e0b77f",
            "packagetype": "sdist",
            "python_version": "source",
            "requires_python": null,
            "size": 7164,
            "upload_time": "2015-10-26T11:25:34",
            "url": "https://files.pythonhosted.org/packages/5b/45/b999d59695b46c56d31f858fd1e0c18a88c2f2dbcf783685e6a75ab41605/findltr-0.0.2.tar.gz"
        }
    ]
}