{ "info": { "author": "Nolan Woods", "author_email": "nolan_w@sfu.ca", "bugtrack_url": null, "classifiers": [ "Environment :: Console", "Intended Audience :: Science/Research", "License :: OSI Approved :: MIT License", "Operating System :: POSIX", "Programming Language :: Python :: 3.7", "Topic :: Scientific/Engineering :: Bio-Informatics" ], "description": ".. image:: https://zenodo.org/badge/166121742.svg\n :target: https://zenodo.org/badge/latestdoi/166121742\n\n=============\nfeature_merge\n=============\nMerge features in GFF files\n\nInstallation::\n\n pip install feature-merge\n\nor::\n\n conda install feature_merge\n\nor::\n\n git clone https://github.com/brinkmanlab/feature_merge.git\n cd feature_merge\n ./setup.py install\n\nUsage::\n\n feature_merge [-i] [-e] [-x] [-v] [-m merge|append|error|skip|replace] [-f type[,type..]].. [..]\n Accepts GFF or GTF format.\n -v Print version and exit\n -f Comma seperated types of features to merge. Must be terms or accessions from the SOFA sequence ontology, \\\"ALL\\\", or \\\"NONE\\\". (Can be provided more than once to specify multiple merge groups)\n -i Ignore strand, merge feature regardless of strand\n -x Only merge features with identical coordinates\n -e Exclude component features from output\n -m Merge strategy used to deal with id collisions between input files.\n merge: attributes of all features with the same primary key will be merged\n append: entry will have a unique, autoincremented primary key assigned to it (default)\n error: exception will be raised. This means you will have to edit the file yourself to fix the duplicated IDs\n skip: ignore duplicates, emitting a warning\n replace: keep last duplicate\n \nSee CONTRIBUTING.rst_ for information on contributing to this repo.\n\n.. _CONTRIBUTING.rst: CONTRIBUTING.rst", "description_content_type": "text/x-rst; charset=UTF-8", "docs_url": null, "download_url": "", "downloads": { "last_day": -1, "last_month": -1, "last_week": -1 }, "home_page": "https://github.com/brinkmanlab/feature_merge", "keywords": "merge,bioinformatics,gff,features,overlap", "license": "MIT Amended", "maintainer": "", "maintainer_email": "", "name": "feature-merge", "package_url": "https://pypi.org/project/feature-merge/", "platform": "", "project_url": "https://pypi.org/project/feature-merge/", "project_urls": { "Homepage": "https://github.com/brinkmanlab/feature_merge" }, "release_url": "https://pypi.org/project/feature-merge/1.1.0/", "requires_dist": null, "requires_python": "", "summary": "Merge overlapping features of GFF/GTF files.", "version": "1.1.0" }, "last_serial": 5886403, "releases": { "1.0.1": [ { "comment_text": "", "digests": { "md5": "7a1ec815144201d9f4d1d21cb1591642", "sha256": "c83a7c5dc204ad47a588f7b9138912484f2fe1d0db54ff1c371c5b570d3243aa" }, "downloads": -1, "filename": "feature_merge-1.0.1.tar.gz", "has_sig": false, "md5_digest": "7a1ec815144201d9f4d1d21cb1591642", "packagetype": "sdist", "python_version": "source", "requires_python": null, "size": 11441, "upload_time": "2019-08-09T22:30:47", "url": "https://files.pythonhosted.org/packages/6f/75/45be3dceb5e546f1ccc7e64235724e05539c96a29fca7accc2e40d138c94/feature_merge-1.0.1.tar.gz" } ], "1.0.2": [ { "comment_text": "", "digests": { "md5": "2bdaeeee48e8b03394177bb23624001d", "sha256": "6a82da5a5ec62af77bc13a69be5fadbf6b53c698d1bd5b5b17215e0f86ef5289" }, "downloads": -1, "filename": "feature_merge-1.0.2.tar.gz", "has_sig": false, "md5_digest": "2bdaeeee48e8b03394177bb23624001d", "packagetype": "sdist", "python_version": "source", "requires_python": null, "size": 11492, "upload_time": "2019-09-16T16:24:28", "url": "https://files.pythonhosted.org/packages/28/54/69ea0f0652feb286dafe08b365447117801c0a5e051b5d02b622ecd0ae6b/feature_merge-1.0.2.tar.gz" } ], "1.1.0": [ { "comment_text": "", "digests": { "md5": "6bf9a39a1549f5f391cc142490d8b210", "sha256": "6d71b7bee358b4e2fc11f11bf6b836712ffb388e85ce585246201878ff1983cc" }, "downloads": -1, "filename": "feature_merge-1.1.0.tar.gz", "has_sig": false, "md5_digest": "6bf9a39a1549f5f391cc142490d8b210", "packagetype": "sdist", "python_version": "source", "requires_python": null, "size": 11917, "upload_time": "2019-09-25T17:12:22", "url": "https://files.pythonhosted.org/packages/f4/55/6d9310a4aedd036b28afd65ebd4a66b234591ea549d8fb85ea181e5e2313/feature_merge-1.1.0.tar.gz" } ] }, "urls": [ { "comment_text": "", "digests": { "md5": "6bf9a39a1549f5f391cc142490d8b210", "sha256": "6d71b7bee358b4e2fc11f11bf6b836712ffb388e85ce585246201878ff1983cc" }, "downloads": -1, "filename": "feature_merge-1.1.0.tar.gz", "has_sig": false, "md5_digest": "6bf9a39a1549f5f391cc142490d8b210", "packagetype": "sdist", "python_version": "source", "requires_python": null, "size": 11917, "upload_time": "2019-09-25T17:12:22", "url": "https://files.pythonhosted.org/packages/f4/55/6d9310a4aedd036b28afd65ebd4a66b234591ea549d8fb85ea181e5e2313/feature_merge-1.1.0.tar.gz" } ] }