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        "author": "Martin Larralde",
        "author_email": "martin.larralde@ens-paris-saclay.fr",
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        "classifiers": [
            "Development Status :: 3 - Alpha",
            "Intended Audience :: Developers",
            "Intended Audience :: Healthcare Industry",
            "Intended Audience :: Science/Research",
            "License :: OSI Approved :: MIT License",
            "Programming Language :: Python :: 3.5",
            "Programming Language :: Python :: 3.6",
            "Programming Language :: Python :: 3.7",
            "Programming Language :: Python :: Implementation :: CPython",
            "Programming Language :: Python :: Implementation :: PyPy",
            "Programming Language :: Rust",
            "Topic :: Scientific/Engineering :: Bio-Informatics",
            "Topic :: Scientific/Engineering :: Medical Science Apps.",
            "Topic :: Software Development :: Libraries :: Python Modules"
        ],
        "description": "# `fastobo-py` [![Star me](https://img.shields.io/github/stars/fastobo/fastobo-py.svg?style=social&label=Star&maxAge=3600)](https://github.com/fastobo/fastobo-py/stargazers)\n\n*Faultless AST for Open Biomedical Ontologies in Python.*\n\n[![TravisCI](https://img.shields.io/travis/fastobo/fastobo-py/master.svg?logo=travis&maxAge=600&style=flat-square)](https://travis-ci.org/fastobo/fastobo-py/branches)\n[![AppVeyor](https://img.shields.io/appveyor/ci/althonos/fastobo-py/master?logo=appveyor&style=flat-square&maxAge=600)](https://ci.appveyor.com/project/althonos/fastobo-py)\n[![License](https://img.shields.io/badge/license-MIT-blue.svg?style=flat-square&maxAge=2678400)](https://choosealicense.com/licenses/mit/)\n[![Source](https://img.shields.io/badge/source-GitHub-303030.svg?maxAge=2678400&style=flat-square)](https://github.com/fastobo/fastobo-py/)\n[![PyPI](https://img.shields.io/pypi/v/fastobo.svg?style=flat-square&maxAge=600)](https://pypi.org/project/fastobo)\n[![Wheel](https://img.shields.io/pypi/wheel/fastobo.svg?style=flat-square&maxAge=2678400)](https://pypi.org/project/fastobo/#files)\n[![Python Versions](https://img.shields.io/pypi/pyversions/fastobo.svg?style=flat-square&maxAge=600)](https://pypi.org/project/fastobo/#files)\n[![PyPI - Implementation](https://img.shields.io/pypi/implementation/fastobo.svg?style=flat-square&maxAge=600)](https://pypi.org/project/fastobo/#files)\n[![Changelog](https://img.shields.io/badge/keep%20a-changelog-8A0707.svg?maxAge=2678400&style=flat-square)](https://github.com/fastobo/fastobo-py/blob/master/CHANGELOG.md)\n[![Documentation](https://img.shields.io/readthedocs/fastobo.svg?maxAge=3600&style=flat-square)](https://fastobo.readthedocs.io/)\n[![GitHub issues](https://img.shields.io/github/issues/fastobo/fastobo-py.svg?style=flat-square&maxAge=600)](https://github.com/fastobo/fastobo-py/issues)\n[![DOI](https://img.shields.io/badge/doi-10.7490%2Ff1000research.1117405.1-brightgreen?style=flat-square&maxAge=31536000)](https://f1000research.com/posters/8-1500)\n\n\n## Overview\n\n[`fastobo`](https://crates.io/crates/fastobo) is a Rust library implementing a\nreliable parser for the OBO file format 1.4. This extension module exports\nidiomatic Python bindings that can be used to load, edit and serialize ontologies\nin the OBO format.\n\n\n## Installation\n\nIf your platform has no pre-built binaries available, you will need to have the Rust\ncompiler installed. See the [documentation on `rust-lang.org`](https://forge.rust-lang.org/other-installation-methods.html)\nto learn how to install Rust on your machine.\n\nInstallation is then supported through `pip`:\n```console\n$ pip install fastobo --user\n```\n\n\n## Usage\n\nAn `OboDoc` instance can be instantiated from a file-handle or from a binary file handle\nusing the `fastobo.load` function, or from a string using the `fastobo.loads` function.\n\n```python\nimport fastobo\nobodoc = fastobo.load(\"../data/ms.obo\")\n```\n\nLoading from a `gzip` file is supported:\n```python\nimport fastobo\nimport gzip\ngzdoc = fastobo.load(gzip.open(\"../data/cl.obo.gz\"))\n```\n\n*Comments can be parsed but neither edited nor serialized, because of a limitation\nwith `pyo3` (the library used to generate the Python bindings). They are supported\nin the Rust version of `fastobo`.*\n\n## Feedback\n\nFound a bug ? Have an enhancement request ? Head over to the\n[GitHub issue tracker](https://github.com/fastobo/fastobo-py/issues) of the project if\nyou need to report or ask something. If you are filling in on a bug, please include as much\ninformation as you can about the issue, and try to recreate the same bug in a simple, easily\nreproducible situation.\n\n\n## About\n\nThis project was developed by [Martin Larralde](https://github.com/althonos)\nas part of a Master's Degree internship in the [BBOP team](http://berkeleybop.org/) of the\n[Lawrence Berkeley National Laboratory](https://www.lbl.gov/), under the supervision of\n[Chris Mungall](http://biosciences.lbl.gov/profiles/chris-mungall/). Cite this project as:\n\n*Larralde M.* **Developing Python and Rust libraries to improve the ontology ecosystem**\n*\\[version 1; not peer reviewed\\].* F1000Research 2019, 8(ISCB Comm J):1500 (poster)\n([https://doi.org/10.7490/f1000research.1117405.1](https://doi.org/10.7490/f1000research.1117405.1))\n\n\n",
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