{ "info": { "author": "Guanliang Meng", "author_email": "linzhi2012@gmail.com", "bugtrack_url": null, "classifiers": [ "Development Status :: 3 - Alpha", "Intended Audience :: Science/Research", "License :: OSI Approved :: GNU General Public License v3 or later (GPLv3+)", "Operating System :: MacOS :: MacOS X", "Operating System :: Microsoft :: Windows", "Operating System :: POSIX :: Linux", "Programming Language :: Python :: 3", "Topic :: Scientific/Engineering :: Bio-Informatics" ], "description": "# extractfq\n\n## 1 Introduction\n\n`extractfq` is a tool to extract some fastq reads from the beginning of the files.\n\n## 2 Installation\n\n pip install extractfq\n\nThere will be a command `extractfq` created under the same directory as your `pip` command.\n\n## 3 Usage\n\n $ extractfq\n usage: extractfq.py [-h] [-fq1 ] [-fq2 ] [-outfq1 ]\n [-outfq2 ] [-size_required ] [-rl ] [-gz]\n [-cache_num ]\n\n Extract some fastq reads from the beginning of the files. Author: Guanliang\n Meng, see https://github.com/linzhi2013/extractfq. This script is part of the\n package `MitoZ`, when you use the script in your work, please cite: MitoZ: A\n toolkit for mitochondrial genome assembly, annotation and visualization with\n NGS data. Guangliang Meng, Yiyuan Li, Chentao Yang, Shanlin Liu (in\n manuscript)\n\n optional arguments:\n -h, --help show this help message and exit\n -fq1 input fastq 1 file\n -fq2 input fastq 2 file\n -outfq1 output fastq 1 file\n -outfq2 output fastq 2 file\n -size_required \n size required in Gigabase. [3]\n -rl read length required. discard the smaller ones, and\n cut the longer ones to this length [None]\n -gz gzip output. [False]\n -cache_num the cache number of reads before writing to the file,\n to speed up. the larger of cache_num, the more memory\n (default is ca. 2G) will be used. [1500000]\n\n## Author\nGuanliang MENG\n\n## Citation\nThis script is part of the package `MitoZ`, when you use the script in your work, please cite:\n\n Guanliang Meng, Yiyuan Li, Chentao Yang, Shanlin Liu. MitoZ: A toolkit for mitochondrial genome assembly, annotation and visualization; doi: https://doi.org/10.1101/489955", "description_content_type": "text/markdown", "docs_url": null, "download_url": "", "downloads": { "last_day": -1, "last_month": -1, "last_week": -1 }, "home_page": "https://github.com/linzhi2013/extractfq", "keywords": "", "license": "", "maintainer": "", "maintainer_email": "", "name": "extractfq", "package_url": "https://pypi.org/project/extractfq/", "platform": "", "project_url": "https://pypi.org/project/extractfq/", "project_urls": { "Homepage": "https://github.com/linzhi2013/extractfq" }, "release_url": "https://pypi.org/project/extractfq/0.0.5/", "requires_dist": null, "requires_python": ">=3", "summary": "Extract some fastq reads (PE/SE) from the beginning of the files", "version": "0.0.5" }, "last_serial": 5150673, "releases": { "0.0.1": [ { "comment_text": "", "digests": { "md5": "709588dd649f8f7979c4253f7f28403a", "sha256": "d8d9ca0681b1b8939bdbcea8ff319d18a4422038927f059791f922a1e51fbe4f" }, "downloads": -1, "filename": "extractfq-0.0.1.tar.gz", "has_sig": false, "md5_digest": "709588dd649f8f7979c4253f7f28403a", "packagetype": "sdist", "python_version": "source", "requires_python": ">=3", "size": 16263, "upload_time": "2018-07-28T15:10:20", "url": "https://files.pythonhosted.org/packages/ba/21/2b702350c6429edf574abf85d3255c24754ea47c6e5b4fc53a4b6a0f33bc/extractfq-0.0.1.tar.gz" } ], "0.0.2": [ { "comment_text": "", "digests": { "md5": "3a685a1965de74e2aad8a88bcb812177", "sha256": "69f48a2a584005934663d4bf36324818cd706d82f679f735766866813fd24b2c" }, "downloads": -1, "filename": "extractfq-0.0.2.tar.gz", "has_sig": false, "md5_digest": "3a685a1965de74e2aad8a88bcb812177", "packagetype": "sdist", "python_version": "source", "requires_python": ">=3", "size": 16775, "upload_time": "2018-09-30T08:05:57", "url": "https://files.pythonhosted.org/packages/3c/81/0072cb72893380f11fa7af7291284618fafbcc59d7c46a1cded2a61011a5/extractfq-0.0.2.tar.gz" } ], "0.0.3": [ { "comment_text": "", "digests": { "md5": "c12448d79c900816b270aefedfdf87c5", "sha256": "486e543ff699808283d7dfe6675f8826ca4aafd8cb7be1bac5349adda614fa0a" }, "downloads": -1, "filename": "extractfq-0.0.3.tar.gz", "has_sig": false, "md5_digest": "c12448d79c900816b270aefedfdf87c5", "packagetype": "sdist", "python_version": "source", "requires_python": ">=3", "size": 17077, "upload_time": "2019-02-14T08:12:02", "url": "https://files.pythonhosted.org/packages/1d/0f/36e1ebbba21e05381757ae3808b346c81718af86be3efebc3da9dd135f62/extractfq-0.0.3.tar.gz" } ], "0.0.4": [ { "comment_text": "", "digests": { "md5": "e7dbec15fc704f5b27cdbb18829ad0db", "sha256": "0b5934edfd108fa58d2aec9bec6082356773cb1d71c93cc0282a0aad7a0f864b" }, "downloads": -1, "filename": "extractfq-0.0.4.tar.gz", "has_sig": false, "md5_digest": "e7dbec15fc704f5b27cdbb18829ad0db", "packagetype": "sdist", "python_version": "source", "requires_python": ">=3", "size": 17086, "upload_time": "2019-02-14T08:33:00", "url": "https://files.pythonhosted.org/packages/c1/ea/d335bca35498a36e2741c4bb1f321730401ea703ca103804aeb42d67a492/extractfq-0.0.4.tar.gz" } ], "0.0.5": [ { "comment_text": "", "digests": { "md5": "de9962ca1a229283efb0dba6091674b9", "sha256": "06dfe4d72f3d8690e1c6c6dfd49d92344fff68c8296b9ecb226a1f1e528955da" }, "downloads": -1, "filename": "extractfq-0.0.5.tar.gz", "has_sig": false, "md5_digest": "de9962ca1a229283efb0dba6091674b9", "packagetype": "sdist", "python_version": "source", "requires_python": ">=3", "size": 17257, "upload_time": "2019-04-16T15:32:20", "url": "https://files.pythonhosted.org/packages/eb/a4/e08b4568cac8d24bbd8a7cba9489debc92187713f618d9379b8071fc8680/extractfq-0.0.5.tar.gz" } ] }, "urls": [ { "comment_text": "", "digests": { "md5": "de9962ca1a229283efb0dba6091674b9", "sha256": "06dfe4d72f3d8690e1c6c6dfd49d92344fff68c8296b9ecb226a1f1e528955da" }, "downloads": -1, "filename": "extractfq-0.0.5.tar.gz", "has_sig": false, "md5_digest": "de9962ca1a229283efb0dba6091674b9", "packagetype": "sdist", "python_version": "source", "requires_python": ">=3", "size": 17257, "upload_time": "2019-04-16T15:32:20", "url": "https://files.pythonhosted.org/packages/eb/a4/e08b4568cac8d24bbd8a7cba9489debc92187713f618d9379b8071fc8680/extractfq-0.0.5.tar.gz" } ] }