{
    "info": {
        "author": "Guanliang Meng",
        "author_email": "mengguanliang@foxmail.com",
        "bugtrack_url": null,
        "classifiers": [
            "Development Status :: 3 - Alpha",
            "Intended Audience :: Science/Research",
            "License :: OSI Approved :: GNU General Public License v3 or later (GPLv3+)",
            "Operating System :: MacOS :: MacOS X",
            "Operating System :: Microsoft :: Windows",
            "Operating System :: POSIX :: Linux",
            "Programming Language :: Python :: 3",
            "Topic :: Scientific/Engineering :: Bio-Informatics"
        ],
        "description": "# extract_specific_sites_from_msa\n\n## 1 Introduction\n\n`extract_specific_sites_from_msa` is a tool to extract some sites (or codon) from a multiple sequence alignment.\n\n## 2 Installation\n\n    pip install extract_specific_sites_from_msa\n\nThere will be a command `extract_specific_sites_from_msa` created under the same directory as your `pip` command.\n\n## 3 Usage\n\n    usage: extract_specific_sites_from_msa [-h] [-infile <file>]\n                                           [-format {fasta,emboss,stockholm,phylip,phylip-relaxed,clustal}]\n                                           [-outformat {fasta,emboss,stockholm,phylip,phylip-relaxed,clustal}]\n                                           [-outfile <file>] [-config <file>]\n                                           [-codon <int>]\n\n    To extract some sites (or codon) from a multiple sequence alignment. By\n    Guanliang MENG, go to\n    https://github.com/linzhi2013/extract_specific_sites_from_msa for more\n    details.\n\n    optional arguments:\n      -h, --help            show this help message and exit\n      -infile <file>        input multiple sequence alignment file\n      -format {fasta,emboss,stockholm,phylip,phylip-relaxed,clustal}\n                            input file format [phylip-relaxed]\n      -outformat {fasta,emboss,stockholm,phylip,phylip-relaxed,clustal}\n                            output file format [fasta]\n      -outfile <file>       outfile\n      -config <file>        a file containing the sites to be extracted (1 left-\n                            based). do not support 2-5, you should write 2 3 4 5\n                            instead, the site numbers in config can be on one line\n                            or multiple lines.\n      -codon <int>          codon site to be extracted [2]\n        \n## Author\nGuanliang MENG\n\n## Citation\nCurrently I have no plan to publish `extract_specific_sites_from_msa`.\n\nHowever, since `extract_specific_sites_from_msa` makes use of Biopython, you should cite it if you use msaconverter in your work:\n\n    Peter J. A. Cock, Tiago Antao, Jeffrey T. Chang, Brad A. Chapman, Cymon J. Cox, Andrew Dalke, Iddo Friedberg, Thomas Hamelryck, Frank Kauff, Bartek Wilczynski, Michiel J. L. de Hoon: \u201cBiopython: freely available Python tools for computational molecular biology and bioinformatics\u201d. Bioinformatics 25 (11), 1422\u20131423 (2009). https://doi.org/10.1093/bioinformatics/btp163\nPlease go to http://www.biopython.org/ for more details.",
        "description_content_type": "text/markdown",
        "docs_url": null,
        "download_url": "",
        "downloads": {
            "last_day": -1,
            "last_month": -1,
            "last_week": -1
        },
        "home_page": "https://github.com/linzhi2013",
        "keywords": "",
        "license": "",
        "maintainer": "",
        "maintainer_email": "",
        "name": "extract-specific-sites-from-msa",
        "package_url": "https://pypi.org/project/extract-specific-sites-from-msa/",
        "platform": "",
        "project_url": "https://pypi.org/project/extract-specific-sites-from-msa/",
        "project_urls": {
            "Homepage": "https://github.com/linzhi2013"
        },
        "release_url": "https://pypi.org/project/extract-specific-sites-from-msa/0.0.2/",
        "requires_dist": null,
        "requires_python": ">=3",
        "summary": "To extract some sites from a multiple sequence alignment. By Guanliang MENG, go to https://github.com/linzhi2013 for more details.",
        "version": "0.0.2"
    },
    "last_serial": 4113275,
    "releases": {
        "0.0.2": [
            {
                "comment_text": "",
                "digests": {
                    "md5": "4031ae7bde59b16aa9ecdd1c3aa5b030",
                    "sha256": "678ac5a4cdc0c0b11aee524a7ba08cb2853530c2630565464aca351c4c3b233b"
                },
                "downloads": -1,
                "filename": "extract_specific_sites_from_msa-0.0.2.tar.gz",
                "has_sig": false,
                "md5_digest": "4031ae7bde59b16aa9ecdd1c3aa5b030",
                "packagetype": "sdist",
                "python_version": "source",
                "requires_python": ">=3",
                "size": 16924,
                "upload_time": "2018-07-29T08:29:15",
                "url": "https://files.pythonhosted.org/packages/16/f2/cb59c67cd6e1e89f4424d1066ee46eaeb2e58594520fd7be778c4f6e13c8/extract_specific_sites_from_msa-0.0.2.tar.gz"
            }
        ]
    },
    "urls": [
        {
            "comment_text": "",
            "digests": {
                "md5": "4031ae7bde59b16aa9ecdd1c3aa5b030",
                "sha256": "678ac5a4cdc0c0b11aee524a7ba08cb2853530c2630565464aca351c4c3b233b"
            },
            "downloads": -1,
            "filename": "extract_specific_sites_from_msa-0.0.2.tar.gz",
            "has_sig": false,
            "md5_digest": "4031ae7bde59b16aa9ecdd1c3aa5b030",
            "packagetype": "sdist",
            "python_version": "source",
            "requires_python": ">=3",
            "size": 16924,
            "upload_time": "2018-07-29T08:29:15",
            "url": "https://files.pythonhosted.org/packages/16/f2/cb59c67cd6e1e89f4424d1066ee46eaeb2e58594520fd7be778c4f6e13c8/extract_specific_sites_from_msa-0.0.2.tar.gz"
        }
    ]
}