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        "author": "Guanliang Meng",
        "author_email": "mengguanliang@foxmail.com",
        "bugtrack_url": null,
        "classifiers": [
            "Development Status :: 3 - Alpha",
            "Intended Audience :: Science/Research",
            "License :: OSI Approved :: GNU General Public License v3 or later (GPLv3+)",
            "Operating System :: MacOS :: MacOS X",
            "Operating System :: Microsoft :: Windows",
            "Operating System :: POSIX :: Linux",
            "Programming Language :: Python :: 3",
            "Topic :: Scientific/Engineering :: Bio-Informatics"
        ],
        "description": "# extract_fasta_seq\n\n## 1 Introduction\n\n`extract_fasta_seq` is a tool to extract specific fasta sequences from a fasta file. By Guanliang MENG, see https://github.com/linzhi2013/extract_fasta_seq\n\n## 2 Installation\n\n    pip install extract_fasta_seq\n\nThere will be a command `extract_fasta_seq` created under the same directory as your `pip` command.\n\n## 3 Usage\n    \n    $ extract_fasta_seq\n    usage: extract_fasta_seq.py [-h] [-q <str> [<str> ...]] [-f <query file>]\n                                [-s [<subject file>]] [-s1 <pattern>]\n                                [-s2 <pattern>] [-d1 [<int>]] [-d2 [<int>]]\n                                [-o [<outfile>]] [-v] [-V] [--lazy] [--version]\n\n    To extract specific fasta sequences from a fasta file. By Guanliang MENG, see\n    https://github.com/linzhi2013\n\n    optional arguments:\n      -h, --help            show this help message and exit\n      -q <str> [<str> ...]  query list. \"-s1\" and \"-d1\" have no effect on this\n                            option.\n      -f <query file>       query list file, one line should contain only one\n                            queryid! (but can be mixed with others, and we can use\n                            \"-s1\" and \"-d1\" option to extract the queryid)\n      -s [<subject file>]   subject file [stdin]\n      -s1 <pattern>         query file sep_pattern [\\s+]\n      -s2 <pattern>         subject file sep_pattern [\\s+]\n      -d1 [<int>]           which field in the query_file is to used? [0]\n      -d2 [<int>]           which field in the subject_file is to used? useful for\n                            finding out all sequences in the subject_file whose\n                            seqids equal to the queryids [0]\n      -o [<outfile>]        outfile [stdout]\n      -v                    invert the output [False]\n      -V                    verbose output\n      --lazy                Stop searching once each required seqid has at least\n                            one sequence found, which can be problems if some\n                            required seqids have more than sequences! Works only\n                            for non-invert mode. [False]\n      --version             show program's version number and exit\n        \n## 4 Author\nGuanliang MENG\n\n## 5 Citation\nCurrently I have no plan to publish `extract_fasta_seq`.",
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