{ "info": { "author": "sxropensource", "author_email": "sxropensource@163.com", "bugtrack_url": null, "classifiers": [ "Development Status :: 5 - Production/Stable", "Intended Audience :: Developers", "Programming Language :: Python :: 3", "Programming Language :: Python :: 3.4", "Programming Language :: Python :: 3.5", "Programming Language :: Python :: 3.6", "Programming Language :: Python :: 3.7", "Topic :: Scientific/Engineering :: Bio-Informatics" ], "description": "# expr2gct\n\ngenerate gct file (version 1.2, for GSEA or ssGSEA) from gene expression matrix file.\nnote that gene expression matrix file should be tab delimited file.\n\n## Installation\n\n### install from pip\n\n```\n$ pip install expr2gct\n```\n\n### install from source\n\n\n```\n$ git clone https://github.com/sxropensource/expr2gct.git\n$ cd expr2gct\n$ python setup.py install\n```\n\n## Usage\n\n\n```\n$ expr2gct --help\nusage: expr2gct [-h] -e EXPR [-d DESC] -g GCT\n\noptional arguments:\n -h, --help show this help message and exit\n -e EXPR, --expr EXPR Gene expression matrix file(tab delimited only), first\n row is sample names, first column is gene symbols\n -d DESC, --desc DESC gct file need DESCRIPTION for column 2 for every gene,\n If not provided, default use gene symbol(column 1)\n instead. Note that if you provide a DESCRIPTION file,\n every row reprents a gene. eg, the first row in\n DESCRIPTION file represents the first gene in\n expression file.\n -g GCT, --gct GCT Where to save gct file\n```\n\n", "description_content_type": "text/markdown", "docs_url": null, "download_url": "", "downloads": { "last_day": -1, "last_month": -1, "last_week": -1 }, "home_page": "https://github.com/sxropensource/expr2gct", "keywords": "GSEA ssGSEA GCT", "license": "", "maintainer": "", "maintainer_email": "", "name": "expr2gct", "package_url": "https://pypi.org/project/expr2gct/", "platform": "", "project_url": "https://pypi.org/project/expr2gct/", "project_urls": { "Homepage": "https://github.com/sxropensource/expr2gct" }, "release_url": "https://pypi.org/project/expr2gct/1.0.0/", "requires_dist": null, "requires_python": "", "summary": "generate gct file (version 1.2, for GSEA or ssGSEA) from gene expression matrix file", "version": "1.0.0" }, "last_serial": 5713833, "releases": { "1.0.0": [ { "comment_text": "", "digests": { "md5": "d12884f5fe6364461ba189b19108dcc8", "sha256": "94261fe2ab21511db8b178f56faa50f0a92a4d825b4f089ba9dfa7ebc1412559" }, "downloads": -1, "filename": "expr2gct-1.0.0-py2-none-any.whl", "has_sig": false, "md5_digest": "d12884f5fe6364461ba189b19108dcc8", "packagetype": "bdist_wheel", "python_version": "py2", "requires_python": null, "size": 4256, "upload_time": "2019-08-22T08:13:07", "url": "https://files.pythonhosted.org/packages/60/d9/3f0361fdbb6cf429737c18b06d037ff881f743565db1e13b73b5d68155b3/expr2gct-1.0.0-py2-none-any.whl" }, { "comment_text": "", "digests": { "md5": "11d1c7fbc79a6569a67d2d43637bab0a", "sha256": "5abf8cfd1c978caaeb46377995b8bff32bea8e54c7220b8b17b858085729ef74" }, "downloads": -1, "filename": "expr2gct-1.0.0-py3-none-any.whl", "has_sig": false, "md5_digest": "11d1c7fbc79a6569a67d2d43637bab0a", "packagetype": "bdist_wheel", "python_version": "py3", "requires_python": null, "size": 4254, "upload_time": "2019-08-22T08:13:09", "url": "https://files.pythonhosted.org/packages/c0/a4/849f02951f8e804786e84d205300b14410ecac56b3199ef8b83cc5279769/expr2gct-1.0.0-py3-none-any.whl" }, { "comment_text": "", "digests": { "md5": "53da4f6b325949b72e7a2a1ddea108ec", "sha256": "d61907865609cd4909db6fbb972f3c7f26d3e7a59a07836dee6e38b397ca4360" }, "downloads": -1, "filename": "expr2gct-1.0.0.tar.gz", "has_sig": false, "md5_digest": "53da4f6b325949b72e7a2a1ddea108ec", "packagetype": "sdist", "python_version": "source", "requires_python": null, "size": 3805, "upload_time": "2019-08-22T08:13:11", "url": "https://files.pythonhosted.org/packages/f8/06/788448e0e3d22048ff92be9852f2c2c1e6701e34dc731da2d87d82363c1e/expr2gct-1.0.0.tar.gz" } ] }, "urls": [ { "comment_text": "", "digests": { "md5": "d12884f5fe6364461ba189b19108dcc8", "sha256": "94261fe2ab21511db8b178f56faa50f0a92a4d825b4f089ba9dfa7ebc1412559" }, "downloads": -1, "filename": "expr2gct-1.0.0-py2-none-any.whl", "has_sig": false, "md5_digest": "d12884f5fe6364461ba189b19108dcc8", "packagetype": "bdist_wheel", "python_version": "py2", "requires_python": null, "size": 4256, "upload_time": "2019-08-22T08:13:07", "url": "https://files.pythonhosted.org/packages/60/d9/3f0361fdbb6cf429737c18b06d037ff881f743565db1e13b73b5d68155b3/expr2gct-1.0.0-py2-none-any.whl" }, { "comment_text": "", "digests": { "md5": "11d1c7fbc79a6569a67d2d43637bab0a", "sha256": "5abf8cfd1c978caaeb46377995b8bff32bea8e54c7220b8b17b858085729ef74" }, "downloads": -1, "filename": "expr2gct-1.0.0-py3-none-any.whl", "has_sig": false, "md5_digest": "11d1c7fbc79a6569a67d2d43637bab0a", "packagetype": "bdist_wheel", "python_version": "py3", "requires_python": null, "size": 4254, "upload_time": "2019-08-22T08:13:09", "url": "https://files.pythonhosted.org/packages/c0/a4/849f02951f8e804786e84d205300b14410ecac56b3199ef8b83cc5279769/expr2gct-1.0.0-py3-none-any.whl" }, { "comment_text": "", "digests": { "md5": "53da4f6b325949b72e7a2a1ddea108ec", "sha256": "d61907865609cd4909db6fbb972f3c7f26d3e7a59a07836dee6e38b397ca4360" }, "downloads": -1, "filename": "expr2gct-1.0.0.tar.gz", "has_sig": false, "md5_digest": "53da4f6b325949b72e7a2a1ddea108ec", "packagetype": "sdist", "python_version": "source", "requires_python": null, "size": 3805, "upload_time": "2019-08-22T08:13:11", "url": "https://files.pythonhosted.org/packages/f8/06/788448e0e3d22048ff92be9852f2c2c1e6701e34dc731da2d87d82363c1e/expr2gct-1.0.0.tar.gz" } ] }