{ "info": { "author": "Jayaram Kancherla", "author_email": "jayaram.kancherla@gmail.com", "bugtrack_url": null, "classifiers": [ "Intended Audience :: Developers", "Intended Audience :: Science/Research", "Natural Language :: English", "Operating System :: MacOS :: MacOS X", "Operating System :: Microsoft :: Windows", "Operating System :: POSIX :: Linux", "Programming Language :: Python :: 3", "Programming Language :: Python :: 3.5", "Programming Language :: Python :: 3.6", "Programming Language :: Python :: 3.7", "Topic :: Scientific/Engineering :: Bio-Informatics", "Topic :: Scientific/Engineering :: Visualization" ], "description": "==================\nEpiviz File Server\n==================\n\n.. image:: https://readthedocs.org/projects/epivizfileparser/badge/?version=latest\n :target: https://epivizfileparser.readthedocs.io/en/latest/?badge=latest\n :alt: Documentation Status\n\n.. image:: https://travis-ci.org/epiviz/epivizFileParser.svg?branch=master\n :target: https://travis-ci.org/epiviz/epivizFileParser\n\nCompute and Query Parser for Genomic Files\n\n\nDescription\n===========\n\n\nEpiviz file Server is a Python library, to query genomic files, \nnot only for visualization but also for transformation. \nThe library provides various modules to perform various tasks - \n- Parser to read various genomic file formats, \n- Query to access only necessary bytes of file, \n- Compute to apply transformations on data, \n- Server to instantly convert the datasets into an API and \n- Visualization. \n\n\nA quick overview of the library and its features, are described in an IPython notebook \navailable at - https://epiviz.github.io/post/2019-02-04-epiviz-fileserver/\n\nNote\n====\n\n1. The library requires the server hosting the data files to support HTTP range requests so that the file server's parser module can only request the necessary byte-ranges needed to process the query\n2. The library currently supports indexed genomic file formats like BigWig, BigBed, Bam (with bai), Sam (with sai) or any genomic data file that can be indexed using tabix.\n\nDeveloper Notes\n===============\n\nThis project has been set up using PyScaffold 3.1. For details and usage\ninformation on PyScaffold see https://pyscaffold.org/.\n\nuse a virtualenv for testing & development. \nTo setup run the following commands from the project directory\n\n.. code-block:: python\n\n virtualenv env --python=python3\n source env/bin/activate # (activate.fish if using the fish-shell)\n pip install -r requirements.txt\n\n # to deactivate virtualenv\n deactivate\n\n1. Test - ```python setup.py test```\n2. Docs - ```python setup.py docs```\n3. Build\n - source distribution ```python setup.py sdist```\n - binary distribution ```python setup.py bdist```\n - wheel distribution ```python setup.py bdist_wheel```\n\n\n", "description_content_type": "", "docs_url": null, "download_url": "", "downloads": { "last_day": -1, "last_month": -1, "last_week": -1 }, "home_page": "https://github.com/epiviz/epivizFileParser", "keywords": "", "license": "mit", "maintainer": "", "maintainer_email": "", "name": "epivizFileServer", "package_url": "https://pypi.org/project/epivizFileServer/", "platform": "any", "project_url": "https://pypi.org/project/epivizFileServer/", "project_urls": { "Homepage": "https://github.com/epiviz/epivizFileParser" }, "release_url": "https://pypi.org/project/epivizFileServer/0.1.2/", "requires_dist": [ "pytest ; extra == 'testing'", "pytest-cov ; extra == 'testing'" ], "requires_python": "", "summary": "A python library to interact, explore and compute data directly from genomic files.", "version": "0.1.2" }, "last_serial": 5274135, "releases": { "0.1.1": [ { "comment_text": "", "digests": { "md5": "be16d940ab964443752bb3cc639d1ede", "sha256": "292cfd204c0d47e7c078c25921af26b4991186dff697059b5eb45f62b63429a9" }, "downloads": -1, "filename": "epivizFileServer-0.1.1.linux-x86_64.tar.gz", "has_sig": false, "md5_digest": "be16d940ab964443752bb3cc639d1ede", "packagetype": "sdist", "python_version": "source", "requires_python": null, "size": 42861, "upload_time": "2019-05-15T19:25:28", "url": "https://files.pythonhosted.org/packages/a9/25/0f86c0d9f4f7d4b93b0507f777657f635d604da964b63cedf43664c31f27/epivizFileServer-0.1.1.linux-x86_64.tar.gz" }, { "comment_text": "", "digests": { "md5": "cd65606fe14eb588172b7e7ec33c6637", "sha256": "bdc57a18673fe39d2bb6e511863c84758ed537b0aa4d9162d41ed286c052d45a" }, "downloads": -1, "filename": "epivizFileServer-0.1.1-py2.py3-none-any.whl", "has_sig": false, "md5_digest": "cd65606fe14eb588172b7e7ec33c6637", "packagetype": "bdist_wheel", "python_version": "py2.py3", "requires_python": null, "size": 30585, "upload_time": "2019-05-15T19:25:25", "url": "https://files.pythonhosted.org/packages/32/67/b5906e5dde98831e3320a7b69db70592de82f267c9f19ce7f86e123d4422/epivizFileServer-0.1.1-py2.py3-none-any.whl" } ], "0.1.2": [ { "comment_text": "", "digests": { "md5": "9175d37747d426f6df59d37706cacb7a", "sha256": "aff76554d6ba0dabd7b86765c6af40440309c9ed098e34d0fcf655e3aff53cc3" }, "downloads": -1, "filename": "epivizFileServer-0.1.2.linux-x86_64.tar.gz", "has_sig": false, "md5_digest": "9175d37747d426f6df59d37706cacb7a", "packagetype": "sdist", "python_version": "source", "requires_python": null, "size": 42881, "upload_time": "2019-05-15T19:54:36", "url": "https://files.pythonhosted.org/packages/80/ae/768d1fe3204d09621391993e2ce2c3d059757c3e542a6162b4e2ce65a533/epivizFileServer-0.1.2.linux-x86_64.tar.gz" }, { "comment_text": "", "digests": { "md5": "f21d72901cc57125d331f44efc661bbe", "sha256": "dae7f98bdfc53fef94834459abc300eb3b66195b9b1d0735325eee1d0d9c8dc4" }, "downloads": -1, "filename": "epivizFileServer-0.1.2-py2.py3-none-any.whl", "has_sig": false, "md5_digest": "f21d72901cc57125d331f44efc661bbe", "packagetype": "bdist_wheel", "python_version": "py2.py3", "requires_python": null, "size": 30592, "upload_time": "2019-05-15T19:54:35", "url": "https://files.pythonhosted.org/packages/d0/32/703e4d82fcf274b916289389408d3ef694ac29b681cc9a9d829b3af7330a/epivizFileServer-0.1.2-py2.py3-none-any.whl" } ] }, "urls": [ { "comment_text": "", "digests": { "md5": "9175d37747d426f6df59d37706cacb7a", "sha256": "aff76554d6ba0dabd7b86765c6af40440309c9ed098e34d0fcf655e3aff53cc3" }, "downloads": -1, "filename": "epivizFileServer-0.1.2.linux-x86_64.tar.gz", "has_sig": false, "md5_digest": "9175d37747d426f6df59d37706cacb7a", "packagetype": "sdist", "python_version": "source", "requires_python": null, "size": 42881, "upload_time": "2019-05-15T19:54:36", "url": "https://files.pythonhosted.org/packages/80/ae/768d1fe3204d09621391993e2ce2c3d059757c3e542a6162b4e2ce65a533/epivizFileServer-0.1.2.linux-x86_64.tar.gz" }, { "comment_text": "", "digests": { "md5": "f21d72901cc57125d331f44efc661bbe", "sha256": "dae7f98bdfc53fef94834459abc300eb3b66195b9b1d0735325eee1d0d9c8dc4" }, "downloads": -1, "filename": "epivizFileServer-0.1.2-py2.py3-none-any.whl", "has_sig": false, "md5_digest": "f21d72901cc57125d331f44efc661bbe", "packagetype": "bdist_wheel", "python_version": "py2.py3", "requires_python": null, "size": 30592, "upload_time": "2019-05-15T19:54:35", "url": "https://files.pythonhosted.org/packages/d0/32/703e4d82fcf274b916289389408d3ef694ac29b681cc9a9d829b3af7330a/epivizFileServer-0.1.2-py2.py3-none-any.whl" } ] }