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        "author": "empress development team",
        "author_email": "cantrell.kalen@gmail.com",
        "bugtrack_url": null,
        "classifiers": [
            "Development Status :: 2 - Pre-Alpha",
            "License :: OSI Approved :: BSD License",
            "Operating System :: MacOS :: MacOS X",
            "Operating System :: POSIX",
            "Operating System :: Unix",
            "Programming Language :: Python :: 3",
            "Programming Language :: Python :: 3 :: Only",
            "Topic :: Scientific/Engineering",
            "Topic :: Scientific/Engineering :: Bio-Informatics",
            "Topic :: Software Development :: Libraries"
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        "description": "Empress is still in early development and new features to add are currently being explored. If you would like to suggest\nsomething you can email kcantrel@ucsd.edu.\n\n# Installation\nPlease install the following packages in order to run Empress\n\n```\nconda create -n empress pip tornado\nsource activate empress\nconda install -c conda-forge scikit-bio\npip install git+https://github.com/biocore/empress.git\n```\n\n# Run\nType the following commands in the terminal for more information\n\n```\nempress --help\n```\n\nA bit of preprocessing occurs after empress is ran. The following message will appear in the terminal when empress is ready\nto be used. \n\n```\nbuild web server\nserver started at port 8080\n```\n\nThen enter the following in a browsers search bar to launch empress.\n\n```\nhttp://localhost:8080/\n```\n\n# Input Formats\nEmpress takes in as input a Newick file for the tree and a tabular mapping file for the feature metadata.\n\nAn example of a feature metadata file would look like something as follows\n\n```\nID           Genome_size     Phyla\nOTU_1001     100000          Proteobacteria\nOTU_1002     150201          Firmicutes\nOTU_2001     502051          Actinobacteria\n```\nThe first column of the metadata files must match the ids in the newick file. In the above example ID is what\nthe newick file would use to name the nodes..\nIf a node does not have a name in the newick file, empress will assign it \"yid\" where id is a number corresponding to its\nposition in the tree.\nNote: to make processing metadata easier, empress will remane the first column of the metadata file to Node_id. So in the \nabove example, ID will show up as Node_id in empress.\n\n# To run sample data set\nTo download sample data enter the following in terminal or go into data/primates and manually download the files.\n\n```\nsvn export https://github.com/biocore/empress.git/trunk/data\n```\n\nBoth leaf_metadata.txt and internal_node_metadata.txt are space delimited. To make combining the metadata files easier,\nempress will rename #SequenceID will show up as Node_id in empress.\n\nHere is an exmple of how internal_node_metadata.txt if formatted.\n\n```\nNode_id Intercept_effect_size   Phyl_Group[T.Lemur]_effect_size ...\ny0  0.02256030930979693 -0.12709112380267737 ...\ny1  -0.15122058716686135    0.1629544435889327 ...\n.\n.\n.\n```\n\nTo run empress type the following command from within the directory where you downloaded the data file\n\n```\nempress --tree-file tree.nwk --metadata leaf_metadata.txt --additional-metadata internal_node_metadata.txt --clade-field Node_id --main-seperator \" \" --additional-seperator \" \"\n```\n--clade-field is what empress will use in its \"clade color\" feature. Node_id was choosen to better demonstrate this feature.\n\nNote: It doesn't matter which metadata is passed in as metadata and which one is passed in as additional-metadata \n\nAfter a couple of seconds the following will display in the terminal.\n\n```\nbuild web server\nserver started at port 8080\n```\n\nOpen up a browser and type the following into the search bar.\n\n```\nhttp://localhost:8080/\n```",
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        "license": "BSD",
        "maintainer": "empress development team",
        "maintainer_email": "cantrell.kalen@gmail.com",
        "name": "empress",
        "package_url": "https://pypi.org/project/empress/",
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        "summary": "Phylogenetic visualizations",
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