{ "info": { "author": "Sean Kelly", "author_email": "sean.kelly@jpl.nasa.gov", "bugtrack_url": null, "classifiers": [ "Development Status :: 4 - Beta", "Environment :: Web Environment", "Framework :: Plone", "Intended Audience :: Healthcare Industry", "Intended Audience :: Science/Research", "License :: OSI Approved :: Apache Software License", "License :: Other/Proprietary License", "Programming Language :: Python", "Topic :: Internet :: WWW/HTTP", "Topic :: Scientific/Engineering :: Bio-Informatics", "Topic :: Software Development :: Libraries :: Python Modules" ], "description": "*********\neke.study\n*********\n\nThis product, ``eke.study``, provides display and RDF ingest of participating\nstudies and medical protocols that are being executed, will be executed, or\nhave been executed by the Early Detection Research Network (EDRN_). Studies\nand protocols are the major research efforts (and therefore funded entities)\nthat EDRN researchers pursue, and therefore are a vital component of the EDRN\nKnowledge Environment (EKE_). EDRN uses the EKE to make it easy to discover,\nshare, search for, and retrieve all of EDRN's collective knowledge, including\ncancers and other diseases, biomarkers, specimens, participants, staff, and-as\nin the case of this product-studies and protocols.\n\nAlthough intended for the EDRN public portal, it can be installed in any\nPlone_ compatible site.\n\nThis software is developed by the `EDRN Informatics Center`_ at JPL_,\noperated by the California Institute of Technology, for NCI_.\n\n*Note for Developers*: Tests for this package do not work correctly under the\nRoadRunner. Use the standard instance test runner instead. (It's not the\nfault of the RoadRunner; it has to do with co-dependency of this project with\neke.biomarker).\n\n\n.. References:\n.. _EDRN Informatics Center: http://cancer.jpl.nasa.gov/\n.. _EDRN: http://edrn.nci.nih.gov/\n.. _EKE: http://cancer.jpl.nasa.gov/documents/applications/knowledge-environment\n.. _JPL: http://www.jpl.nasa.gov/\n.. _NCI: http://cancer.gov/\n.. _Plone: http://plone.org/\n\n\nInstallation\n============\n\nUse Buildout_ with the plone.recipe.zope2instance recipe.\n\n\u2022 Add ``eke.study`` to the list of eggs to install, e.g.::\n \n [buildout]\n ...\n eggs =\n ...\n eke.study\n \n\u2022 Re-run buildout, e.g. with::\n \n % ./bin/buildout\n \nYou can skip the ZCML slug if you are going to explicitly include the package\nfrom another package's configure.zcml file.\n\n.. References:\n.. _Buildout: http://www.buildout.org/\n\n\nChangelog\n=========\n\nA retrospective of the various releases this component has had, what's been\nchanged, what's been fixed, and so forth, follows. For issue IDs mentioned\nbelow, see the issue tracker at https://oodt.jpl.nasa.gov/jira/browse/CA\n\n\n1.1.18 \u2014 Plone 4.3.9 Upgrade\n----------------------------\n\n\u2022 CA-1592\n\n\n1.1.17 \u2014 Let's Get Involved!\n----------------------------\n\n\u2022 CA-1492 - Need to include involved investigators in Investigator and Protocol pages\n\n\n1.1.16 \u2014 You're Not That Vain\n-----------------------------\n\n\u2022 CA-1492 - Involved investigator sites not appearing on protocols\n\u2022 CA-1497 - Duplicates appearing in involved investigator sites\n\u2022 CA-1498 - Add anchors for biomarkers and science data\n\u2022 CA-1450 - eke.study ingest should honor http://edrn.nci.nih.gov/rdf/schema.rdf#projectFlag\n\n\n1.1.15 \u2014 Werk Werk\n------------------\n\n\u2022 CA-1436 - Collaborative Group Workspaces - Separate Projects and Protocols\n\u2022 CA-1437 - Portal upgrade clears \"project\" flag\n\n\n1.1.14 \u2014 Bad Data\n-----------------\n\n\u2022 CA-1430 - Portal cannot ingest protocol #0\n\n\n1.1.13 \u2014 Bug Fixes\n------------------\n\n\u2022 CA-1300\n\u2022 CA-1292\n\u2022 CA-1302\n\n\n1.1.12 \u2014 I Had Some Chicken; Pass Me the FLOSS\n----------------------------------------------\n\n\u2022 First official release as free/libre/open source software.\n\n\n1.1.11 \u2014 Let's Talk\n-------------------\n\n\u2022 CA-1229 - Discussion re-enabled after upgrade\n\n\n1.1.10 \u2014\u00a0Non-EDRN Protocols and Non-EDRN Protocols\n--------------------------------------------------\n\n\u2022 CA-1122 - Indicate if Protocol is not an EDRN Protocol\n\u2022 CA-1148 - Remove description from Protocols it's duplicated in the abstract\n\n\n1.1.9 \u2014 Closing Security Holes\n------------------------------\n\n\u2022 Made compatible with Plone 4.3.\n\n\n1.1.8 \u2014\u00a0More Upgrades\n---------------------\n\n\u2022 Made compatible with Plone 4.2.4\n\n\n1.1.7 \u2014 Unicode, Again\n----------------------\n\n\u2022 CA-1005 - Non-US-ASCII characters in protocol title causes catalog rebuild\n to fail.\n\n\n1.1.6 \u2014 Upgrades\n----------------\n\nMade compatible with Plone 4.1.5 and eea.facetednavigation 4.5. Also,\naddressed the following issues:\n\n\u2022 CA-965 - Log the upgrade process\n\u2022 CA-978 - eke.study can't handle RDF with duplicate protocol titles\n\n\n1.1.5 \u2014 Test Support\n--------------------\n\nThis release includes:\n\n* Depending on just Plone the framework instead of Plone the application.\n* Working around null dataset names and investigator names.\n\n\n1.1.4 \u2014 Permanently adds 15 resilience to a shoulder slot item\n--------------------------------------------------------------\n\nThis release makes functional tests even more resilient.\n\n\n1.1.3 \u2014 Adds 40 Resilience Rating\n---------------------------------\n\nThis release makes functional tests more resilient.\n\n\n1.1.2 \u2014 Yay Team!\n-----------------\n\nThis release expands on team projects, adding an index for projects, badging\nof projects, and a vocabulary to enumerate them. Also, during RDF ingest, it\nconnects protocols to collaborative groups.\n\n\n1.1.1 \u2014 Upgrade Cleanup\n-----------------------\n \nThis release updates the GenericSetup profile to 4, provides upgrade steps to\nthat profile, and makes the testing and development harness depend on \"trunk\"\nlevel of other eggs instead of on released versions of those eggs. Also, it\nremoves in incompatible profile dependency.\n\n\n1.1.0 \u2014 Plone 4\n---------------\n\nThis release makes eke.study compatible with Plone 4.\n\n\n1.0.2 \u2014 A Mixed Bag\n-------------------\n\nThis release fixes a couple of issues:\n\n* CA-583 - Add PDFs to Protocols\n* CA-620 - Locks appear on biomarkers listed under a protocol incorrectly\n (implementation)\n\n\n1.0.1 \u2014 Protocol IDs\n--------------------\n\nThis release addresses just one tiny little issue:\n\n* CA-659 - Add protocol ID to protocol view\n\nYou can find the issue tracker at https://oodt.jpl.nasa.gov/jira/browse/CA\n\n\n1.0.0 \u2014 Prime Time\n------------------\n\nThis release addresses a number of issues \nthat make this component (and some of its\nselected counterparts) \"prime time\" for\nthe operational NCI portal. \n\nThis release addresses the following issues:\n\n* CA-528 Automatic periodic ingest of RDF\n\nYou can find the issue tracker at https://oodt.jpl.nasa.gov/jira/browse/CA\n\n\n0.0.3 \u2014 Filler Text\n-------------------\n\nThis release addresses the following issues:\n\n* CA-586 - Show alternative text (if abstract text is empty) on protocol list\n page\n* CA-604 - Add PI to Protocol List\n\nYou can find the issue tracker at https://oodt.jpl.nasa.gov/jira/browse/CA\n\n\n0.0.2 \u2014 To Be Named At Release Time\n-----------------------------------\n\nThis release addresses the following issues:\n\n* https://oodt.jpl.nasa.gov/jira/browse/CA-551 - Add lock icon to biomarkers\n and science data that are \"secure\" to protocol pages\n* https://oodt.jpl.nasa.gov/jira/browse/CA-523 - Create search indexes; in\n particular, searches are enabled for abbreviated protocol name, biomarker\n names, PI names, collaborative group text, dataset names (courtesy of\n updates to ``eke.ecas``), and involved investigator sites.\n\n\n0.0.1 \u2014 HTML Formatting\n-----------------------\n\nThe following issue is the sole issue addressed in this release:\n\n* http://oodt.jpl.nasa.gov/jira/browse/CA-472 - Protocols and other items seem\n to still have encoded ASCII characters in the titles\n\n\nRelease 0.0.0\n-------------\n\nBeta release. This release is destined to become the FCS_.\n\n\n.. 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