{ "info": { "author": "Sean Kelly", "author_email": "sean.kelly@jpl.nasa.gov", "bugtrack_url": null, "classifiers": [ "Development Status :: 4 - Beta", "Environment :: Web Environment", "Framework :: Plone", "Intended Audience :: Healthcare Industry", "Intended Audience :: Science/Research", "License :: OSI Approved :: Apache Software License", "Operating System :: OS Independent", "Programming Language :: Python", "Topic :: Internet :: WWW/HTTP", "Topic :: Scientific/Engineering :: Bio-Informatics", "Topic :: Software Development :: Libraries :: Python Modules" ], "description": "***************\nedrnsite.policy\n***************\n\nThis is the \"policy\" product for the public portal of the Early Detection\nResearch Network (EDRN_). This product, intended for Plone_, specifies no\ncustom content types or look-and-feel, but instead specifies minimum policy\nsettings and orchestrates all other dependent components. So, to turn a\nPlone_ site into the EDRN public portal, just install this component.\n\nIt was developed by the Informatics Center (IC_), operated by JPL_.\n\n.. References:\n.. _EDRN: http://edrn.nci.nih.gov/\n.. _IC: http://cancer.jpl.nasa.gov/\n.. _JPL: http://www.jpl.nasa.gov/\n.. _Plone: http://plone.org/\n\n\n\nInstallation\n============\n\nUse Buildout_ with the plone.recipe.zope2instance recipe.\n\n\u2022 Add ``edrnsite.policy`` to the list of eggs to install, e.g.::\n \n [buildout]\n ...\n eggs =\n ...\n edrnsite.policy\n \n\u2022 Re-run buildout, e.g. with::\n \n % ./bin/buildout\n \nYou can skip the ZCML slug if you are going to explicitly include the package\nfrom another package's configure.zcml file.\n\n.. References:\n.. _Buildout: http://www.buildout.org/\n\n\nChangelog\n=========\n\nWhat follows is a history of changes from release to release. More detail\nabout the issues mentioned here can be found at the issue tracker, at::\n\n https://oodt.jpl.nasa.gov/jira/browse/CA\n\n\n1.2.22 \u2014 Plone 4.3.9 Upgrade\n----------------------------\n\n\u2022 CA-1543 - Send email after RDF ingest\n\u2022 CA-1592\n\n\n1.2.21 \u2014 You're Not That Vain\n-----------------------------\n\n\u2022 CA-1498 - Disable vanity pages\n\u2022 CA-1306 - Minimal portal needs to not spam Karl Krueger\n\n\n1.2.20 \u2014 You're So Vain\n-----------------------\n\n\u2022 Upgrade steps to support vanity pages\n\n\n1.2.19 \u2014 Pork and Beans\n-----------------------\n\n\u2022 CA-1421 - Updates to Science Data Tab\n\u2022 CA-1436 - Collaborative Group Workspaces - Separate Projects and Protocols\n\n\n1.2.18 \u2014 Panic Mode\n-------------------\n\n\u2022 CA-1423 - Collaborative groups should show documents in reverse\n chronological order\n\n\n1.2.17 \u2014 Visuals\n----------------\n\n\u2022 Visualizations\n\n\n1.2.16 \u2014 Release to NCI\n-----------------------\n\n\u2022 https://oodt.jpl.nasa.gov/jira/browse/CA-1324\n\n\n1.2.15 \u2014 Various Upgrades\n-------------------------\n\n\u2022 Added Secretome, then removed Secretome.\n\u2022 Set new Biomuta ingest path for biomarkers.\n\u2022 No longer rely on python-ldap==2.3.13.\n\n\n1.2.14 \u2014\u00a0Bug Fixes\n------------------\n\n\u2022 CA-1292\n\u2022 CA-1300\n\u2022 CA-1302\n\u2022 CA-1303\n\n\n1.2.13 \u2014 More Publishing!\n-------------------------\n\n\u2022 CA-759: Improve publication layout.\n\n\n1.2.12 \u2014 You're Nothing Unless You Publish\n------------------------------------------\n\n\u2022 CA-179: upgrade eke.publications and hide its right-side portlets.\n\n\n1.2.11 \u2014 I Had Some Chicken; Pass Me the FLOSS\n----------------------------------------------\n\n\u2022 First official release as free/libre/open source software.\n\n\n1.2.10 \u2014 La Sigh\n----------------\n\n\u2022 CA-1237 - Stripped-down portal has ingest enabled; should be disabled\n\n\n1.2.9 \u2014\u00a0Le Sigh\n---------------\n\n\u2022 CA-1236 - Stripped-down portal's Super User LDAP group has no Management\n permissions\n\n\n1.2.8 \u2014\u00a0Direct Me To Your Leader\n--------------------------------\n\n\u2022 CA-1231 - Stripped down EDRN Portal doesn't have LDAP\n\n\n1.2.7 \u2014 Quickie\n---------------\n\n\u2022 Upgrade eke.biomarker during edrnsite.policy upgrade\n\u2022 CA-1219 - Portal installer should provide option to cull content for speedy\n scanning\n\u2022 CA-1230 - Quick Links Portlets needs buttons for Informatics and Network\n Consulting Team\n\n\n1.2.6 \u2014 Upgrades\n----------------\n\n\u2022 Remove dependency on edrnsite.search\n\u2022 Make compatible with Plone 4.3\n\n\n1.2.5 \u2014 You're So Vain\n----------------------\n\n\u2022 Rebuild the catalog after ingest so that sites and protocols appear when\n using the new RDF server.\n\u2022 Add edrnsite.vanity\n\n\n1.2.4 \u2014\u00a0Groups In SPAAAAACE!\n----------------------------\n\n\u2022 Support CA-1001: delete old committees on upgrade so that\n Group-Space\u2013based can replace them.\n\n\n1.2.3 \u2014 NCI Deployment\n----------------------\n\nThis release updates the upgrade process of the EDRN site policy so that the\nEDRN portal is left in a state where it's ready to be scanned by Rational\nAppScan:\n\n\u2022 Content rules are disabled (no email notifications)\n\u2022 Link integrity checks are disabled\n\u2022 Routine RDF ingest is disabled\n\u2022 The portal \"from\" email address is set to a developer's email.\n\n\n1.2.2 \u2014 Upgrades\n----------------\n\nMade compatible with Plone 4.1.5 and eea.facetednavigation 4.5. Also\naddressed the following issues:\n\n\u2022 CA-965 - Log the upgrade process\n\u2022 CA-982 - Improper Google Analytics javascript\n\n\n1.2.1 \u2014 Screw Staging\n---------------------\n\nThis release includes:\n\n* CA-917 - A framework for migrating content from duplicate-but-unofficial\n instances of the EDRN public portal to future official deployments of the\n EDRN public portal.\n* CA-927 - Science Data tab broken on latest EDRN Public Portal\n\n\n1.2.0 \u2014 Third Time's the Charm\n------------------------------\n\nThis release includes the following:\n\n* CA-841 - Project flags cleared and disassociated from Collaborative Groups\n (from Kincaid via IM)\n* Locks some versions of dependent components\n* Updates portal database from profile 4 to 5. Profile 4 corresponds to\n edrn.nci.nih.gov-4.1-FINAL and was deployed at NCI in December 2011.\n* Upgrades to Plone 4.1 and EEA's Faceted Navigation 4.1\n* CA-872 - Tabs gone from Collaborative Groups post-4.1.4.\n* CA-873 - Login Lockout database should be cleared on upgrade\n* Updating to the plone.app.testing fixtures.\n* CA-879 - Emails from Collaborative Groups occasionally have ${fields} with\n no substituted information\n\n\n1.1.8 \u2014\u00a0Misc\n------------\n\nThis release addresses the following:\n\n* CA-812 - WYSIWYG editor is set to \"Kupu\" in Portal 4, should be \"TinyMCE\"\n* CA-770 - Enable versioning on files\n\n\n1.1.7 \u2014 Fresh Specimens\n-----------------------\n\nThis release includes the brand new eke.specimens package which simplifies\nspecimens for reference sets, PRoBE, and ERNE.\n\n\n1.1.6 \u2014 Signing Secrets\n-----------------------\n\nThis release covers:\n\n* CA-786 - Signing secrets not updated in P4\n* CA-782 - plone.app.caching not including in EDRN Portal 4\n\n\n1.1.5 \u2014 Members List Improvements\n---------------------------------\n\nThis release covers:\n\n* CA-789 - Members list improvements\n\n\n1.1.4 \u2014 Edges So Smooth They Squeak\n-----------------------------------\n\nThis release:\n\n* Leaves Collaborative Group objects as \"private\".\n* Adds sharing permissions to Collaborative Groups.\n* Initially sets the chair and co-chair of Collaborative Groups.\n* Honestly enables table sorting for all users.\n\n\n1.1.3 \u2014 Smoother Edges\n----------------------\n\nThis release includes:\n\n* Table sorting enabled for all users, not just authenticated users\n* Upgrades to the Publications tab with AJAX filtering\n\n\n1.1.2 \u2014 Let's Collaborate!\n--------------------------\n\nThis release includes:\n\n* Collaborative groups, provided by the edrnsite.collaborations package.\n* A default collaborative group container at /collaborative-groups.\n* UI improvements to users & groups by enabling Plone's \"many_users\" and\n \"many_groups\" properties.\n* Upgrade improvements.\n\n\n1.1.1 \u2014 Upgrade Cleanup\n-----------------------\n\nThis release includes the following:\n\n* Cleaned up upgrade path for profile version 0-to-1 and 1-to-4.\n* Removal of TTW customizations from operational database that are now\n captured in software.\n* Removal of framework upgrade since that's out of this package's purview.\n\n\n1.1.0 \u2014 Plone 4\n---------------\n\nThis release makes edrnsite.policy compatible with Plone 4.\n\n\n1.0.5 \u2014 NCI Hates Cookies\n-------------------------\n\nThe following issues were addressed in this release:\n\n* CA-743 - Disable Google Analytics\n* CA-742 - Apply fix for CVE-2011-0720\n* CA-597 - Add clock event to update sign-in secret\n\n\n1.0.4 \u2014 The Googles, They Do Nothing\n------------------------------------\n\nThe following issue was addressed in this release:\n\n* CA-726 - Google verification now requires specific page content\n\n\n1.0.3 \u2014 A Mixed Bag\n-------------------\n\nThe following issues were addressed in this release:\n\n* CA-681 - Fix the word staffers to say just staff\n* CA-698 - \"Structural\" objects appear in searches\n\n\n1.0.2 \u2014 Specimen Search\n-----------------------\n\nThis time around, the policy package implements a dynamic search page for EDRN\nspecimens. (There is no corresponding issue in the issue tracker for this new\nfeature; or if there is, the issue tracker is down as I write this and can't\nconfirm.)\n\nThe following issues are also addressed by this release:\n\n* CA-684 - Breadcrumb links are not correct on specimen search tab\n* CA-667 - Organ and title edits that were added were lost when re-ingesting\n\n\n1.0.1 \u2014 Ingest Cleanup\n----------------------\n\nThis release addresses the following:\n\n* CA-649 - Automatic ingest is not updating publication state\n* CA-662 - Remove \"Potential Link Breakage\" message from automatic ingest\n\nIt also adds a dynamic list of EDRN members and allows YouTube videos to be\nembedded in portal pages. See the issue tracker at\nhttps://oodt.jpl.nasa.gov/jira/browse/CA for more details.\n\n\n1.0.0 \u2014 Automation Spam\n-----------------------\n\nThis release addresses several issues: the automatic periodic ingest of RDF\ninformation into the portal from its various information sources. You can\nread more about this issue at https://oodt.jpl.nasa.gov/jira/browse/CA-528.\n\nIt also adds search and tracking of tissue and other specimens from ERNE, the\nEDRN Resource Network Exchange.\n\nFinally, it reworks the logic by which the emailed portal notices are sent.\nPreviously, any content addition, deletion, modification, or any content\npublication state change would trigger an email to the DMCC. These included\nall changes during RDF ingest, which could amount to thousands of such\nchanges.\n\nNow, the email notice is sent solely if the user who's doing the change is a\nmember of the \"National Cancer Institute\" group. For more details on this\nupdate, see https://oodt.jpl.nasa.gov/jira/browse/CA-644.\n\n\n0.0.7 \u2014 The Eleventh Hour\n-------------------------\n\nAfter viewing the new look-and-feel for EDRN across a variety of applications,\nmanagement suddenly realizes they don't like it. This release attempts to\nsatisfy them. See https://oodt.jpl.nasa.gov/jira/browse/CA-599 for more.\n\n\n0.0.6 \u2014 Jackie Hates Our Content\n--------------------------------\n\nIn release 0.0.6 of this component, we've addressed the following issues:\n\n* https://oodt.jpl.nasa.gov/jira/browse/CA-577 - Update the Sample Reference\n Sets page\n* https://oodt.jpl.nasa.gov/jira/browse/CA-579 - Access to secure web site\n link goes to wrong URL\n* https://oodt.jpl.nasa.gov/jira/browse/CA-582 - Publications missing authors\n\n\n0.0.5 \u2014 Content in Four Part Harmony\n------------------------------------\n\nThe following issues are addressed in this release:\n\n* Content harmonized between the old operational portal (version 2) and beta\n demonstration portal (version 3 at http://edrn.jpl.nasa.gov/portal3.0).\n* https://oodt.jpl.nasa.gov/jira/browse/CA-379 - Generate email notification\n to DMCC when portal changes are approved at NCI\n* https://oodt.jpl.nasa.gov/jira/browse/CA-540 - PI not showing for a site\n* https://oodt.jpl.nasa.gov/jira/browse/CA-541 - Add to software repository\n* https://oodt.jpl.nasa.gov/jira/browse/CA-549 - Biological Specimens Link\n under Resources - Page doesn't exist\n* https://oodt.jpl.nasa.gov/jira/browse/CA-559 - The current EDRN-Wide\n Collaborations link downloads a protocol search html\n* https://oodt.jpl.nasa.gov/jira/browse/CA-561 - Subscription to a listserv\n link - page doesn't exist\n* https://oodt.jpl.nasa.gov/jira/browse/CA-563 - Remove CDE Links from Portal\n\n\n0.0.4 \u2014 To Be Named At Release Time\n-----------------------------------\n\nThe following issues are addressed in this release:\n\n* http://oodt.jpl.nasa.gov/jira/browse/CA-526 - Duplicate science-data\n deployed as part of portal setup\n\n\n0.0.3 \u2014 EDRN SC Meeting 2010 RDF-ification\n------------------------------------------\n* http://oodt.jpl.nasa.gov/jira/browse/CA-521 - Load EDRN SC Mar 2010 meeting RDF into portal cache\n* http://oodt.jpl.nasa.gov/jira/browse/CA-498 - Disable mailing of\n password-reset messages.\n* http://oodt.jpl.nasa.gov/jira/browse/CA-508 - Travel Fellowships out-of-date\n* http://oodt.jpl.nasa.gov/jira/browse/CA-509 - Research Tools need updating\n\n\n0.0.2 \u2014 Starting Content & Polish\n---------------------------------\n\nThis release includes a refresh cache of knowledge from the EDRN Catalog and\nArchive Service, the Biomarker Database, and the EDRN DMCC RDF Service. In\naddition, this release addresses the following issues:\n\n* http://oodt.jpl.nasa.gov/jira/browse/CA-482 - For Researchers - EDRN\n Investigators' Publications - Page Doesn't Exist\n* http://oodt.jpl.nasa.gov/jira/browse/CA-481 - Remove CDE Spreadsheet and\n PDF. Add CDE Search\n* http://oodt.jpl.nasa.gov/jira/browse/CA-480 - Study Design Guidance Tools\n page in \"old\" format\n* http://oodt.jpl.nasa.gov/jira/browse/CA-478 - Public, Patients, Advocates -\n EDRN Informatics link - Page Does Not Exist\n* http://oodt.jpl.nasa.gov/jira/browse/CA-470 - List of \"BDL\" sites point to\n old DMCC site\n* http://oodt.jpl.nasa.gov/jira/browse/CA-435 - Remove :log in to add comments\n from public portal pages\n* http://oodt.jpl.nasa.gov/jira/browse/CA-486 - Application Procedure, Receipt\n Dates, and Review - Contact Investigator Link - Page Doesn't Exist\n\n\n0.0.1 \u2014 Content Updates and Broken Links\n----------------------------------------\n\nThe following issues have been addressed in this release:\n\n* http://oodt.jpl.nasa.gov/jira/browse/CA-469 - List of sites on \"About EDRN\"\n still points to the old site at DMCC\n* http://oodt.jpl.nasa.gov/jira/browse/CA-471 - Under patient advocates, press\n releases - sorry page doesn't exist...\n* 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