{ "info": { "author": "Isabelle Berger", "author_email": "isabelle@gwu.edu", "bugtrack_url": null, "classifiers": [ "Development Status :: 2 - Pre-Alpha", "Intended Audience :: Developers", "License :: OSI Approved :: MIT License", "Natural Language :: English", "Programming Language :: Python :: 2", "Programming Language :: Python :: 2.7", "Programming Language :: Python :: 3", "Programming Language :: Python :: 3.4", "Programming Language :: Python :: 3.5", "Programming Language :: Python :: 3.6", "Programming Language :: Python :: 3.7" ], "description": "=======\ndrosSRA\n=======\n\n\n.. image:: https://img.shields.io/pypi/v/drosSRA.svg\n :target: https://pypi.python.org/pypi/drosSRA\n\n.. image:: https://img.shields.io/travis/isabelleberger/drosSRA.svg\n :target: https://travis-ci.org/isabelleberger/drosSRA\n\n.. image:: https://readthedocs.org/projects/drossra/badge/?version=latest\n :target: https://drossra.readthedocs.io/en/latest/?badge=latest\n :alt: Documentation Status\n\n\n\n\n``drosSRA`` builds a url containing all relevant GEO_ tracks based on one or more user specified parameters (i.e. sex, tissue, cell type)\n\n* Free software: MIT license\n* Documentation: https://drosSRA.readthedocs.io.\n\nInstallation\n------------\n\nTo download and install the latest version of ``drosSRA``: ::\n\n pip install drosSRA\n\nUsage\n-----\n\nThere are five possible flags that users can use to search for tracks of interest: PubMed ID (``-p``), sex (``-s``), developmental stage (``-d``), tissue (``-t``), and cell type (``-c``).\nFor example, if you are interested in viewing all tracks with testis data::\n\n >> drosSRA -t testis\n https://www.ncbi.nlm.nih.gov/genome/gdv/browser/?context=genome&acc=GCF_000001215.4&context=GEO&acc=ERX2162339%2CERX2162340%2CERX2162341%2CSRX014984%2CSRX014985%2CSRX1026313%2CSRX1045309%2CSRX1045369%2CSRX105953%2CSRX109278%2CSRX109279%2CSRX135547%2CSRX135548%2CSRX142027%2CSRX142028%2CSRX142029%2CSRX142030%2CSRX142031%2CSRX142032%2CSRX1512980%2CSRX1542553%2CSRX1542554%2CSRX1542555%2CSRX1542556%2CSRX1542557%2CSRX1637725%2CSRX1637726%2CSRX1637727%2CSRX1637728%2CSRX1637729%2CSRX1637730%2CSRX1637731%2CSRX1637732%2CSRX1637733%2CSRX1637734%2CSRX1637735%2CSRX1637736%2CSRX1720957%2CSRX1720958%2CSRX1842650%2CSRX1842775%2CSRX2166012%2CSRX2166014%2CSRX2166016%2CSRX2166017%2CSRX2166019%2CSRX2166020%2CSRX2166021%2CSRX2325622%2CSRX2325623%2CSRX2325625%2CSRX2325626%2CSRX2325628%2CSRX2325629%2CSRX2325630%2CSRX2325631%2CSRX2416970%2CSRX2416971%2CSRX2416972%2CSRX2416973%2CSRX2416974%2CSRX2416975%2CSRX2416976%2CSRX2416977%2CSRX2497546%2CSRX2497547%2CSRX2497548%2CSRX2497549%2CSRX2497550%2CSRX2497551%2CSRX2504297%2CSRX2504298%2CSRX2504299%2CSRX2504300%2CSRX2549197%2CSRX2549198%2CSRX2549199%2CSRX2677260%2CSRX2677261%2CSRX2677262%2CSRX2677263%2CSRX2683539%2CSRX2683540%2CSRX2683541%2CSRX2683542%2CSRX2683543%2CSRX2683545%2CSRX2683546%2CSRX2683547%2CSRX2683548%2CSRX2683550%2CSRX2683551%2CSRX2829107%2CSRX2829108%2CSRX2829109%2CSRX2829110%2CSRX3015350%2CSRX3015366%2CSRX319676%2CSRX319687%2CSRX320021%2CSRX320263%2CSRX321521%2CSRX321778%2CSRX3488043%2CSRX3488044%2CSRX3488045%2CSRX3488046%2CSRX3488047\n\nOr, if you are interested in the intersection of two or more parameters, ::\n\n >> drosSRA -d 'larval stage' -t CNS\n https://www.ncbi.nlm.nih.gov/genome/gdv/browser/?context=genome&acc=GCF_000001215.4&context=GEO&acc=ERX2162997%2CERX2162999\n\nCredits\n-------\n\nThis package was created with Cookiecutter_ and the `audreyr/cookiecutter-pypackage`_ project template.\n\n.. _GEO: https://www.ncbi.nlm.nih.gov/geo/\n.. _Cookiecutter: https://github.com/audreyr/cookiecutter\n.. _`audreyr/cookiecutter-pypackage`: https://github.com/audreyr/cookiecutter-pypackage\n\n\n=======\nHistory\n=======\n\n0.4.1 (2018-10-24)\n------------------\n\n* patch to fix deployment with travis\n\n0.4.0 (2018-10-23)\n------------------\n\n* Genome browser automatically opens to pita\n\n\n0.3.0 (2018-10-22)\n------------------\n\n* Rework of drosSRA.py to handle multiple flags\n\n\n0.2.0 (2018-10-16)\n------------------\n\n* First release on PyPI. (0.1.0 got messed up)\n\n\n", "description_content_type": "", "docs_url": null, "download_url": "", "downloads": { "last_day": -1, "last_month": -1, "last_week": -1 }, "home_page": "https://github.com/isabelleberger/drosSRA", "keywords": "drosSRA", "license": "MIT license", "maintainer": "", "maintainer_email": "", "name": "drosSRA", "package_url": "https://pypi.org/project/drosSRA/", "platform": "", "project_url": "https://pypi.org/project/drosSRA/", "project_urls": { "Homepage": "https://github.com/isabelleberger/drosSRA" }, "release_url": "https://pypi.org/project/drosSRA/0.4.5/", "requires_dist": [ "pandas", "argparse" ], "requires_python": "", "summary": "drosSRA builds a url for visualization of tracks based on user specified parameters (i.e. sex, tissue, cell type)", "version": "0.4.5" }, "last_serial": 4438030, "releases": { "0.2.0": [ { "comment_text": "", "digests": { "md5": "7ec02dbe40e9dc1021df648ccf02a4e2", "sha256": "e9562d92d2d93500ca34abe4d9d4ca2b4879f10fe66c90ca1812bb51e35f8388" }, "downloads": -1, "filename": "drosSRA-0.2.0-py2.py3-none-any.whl", "has_sig": false, "md5_digest": "7ec02dbe40e9dc1021df648ccf02a4e2", "packagetype": "bdist_wheel", "python_version": "py2.py3", "requires_python": null, "size": 2961, "upload_time": "2018-10-18T14:33:36", "url": "https://files.pythonhosted.org/packages/3e/d7/a14529858061b837607c7abd37c28ba6687bcee6d7a3e7859e449de0ce9b/drosSRA-0.2.0-py2.py3-none-any.whl" }, { "comment_text": "", "digests": { "md5": "4cbd4094b7b2d2ff9ddcd910fb5cb8fd", "sha256": "436cff185c95cc6473554b7af04d523a249d85bd5ef89343aad3b18737e73e4e" }, "downloads": -1, "filename": "drosSRA-0.2.0.tar.gz", "has_sig": false, "md5_digest": "4cbd4094b7b2d2ff9ddcd910fb5cb8fd", "packagetype": "sdist", "python_version": "source", "requires_python": null, "size": 9290, "upload_time": "2018-10-18T14:33:37", "url": "https://files.pythonhosted.org/packages/34/46/07def8ed671c78cd5441c2ac85f969dbf5c9690c011546e18e91aa1ae0c8/drosSRA-0.2.0.tar.gz" } ], "0.3.0": [ { "comment_text": "", "digests": { "md5": "95691c6ed58a3dab30d17d75a9b77fe8", "sha256": "94e39a334a087218644f94a2bcaa2e53e01a3208ff157280834ea4ef443eb961" }, "downloads": -1, "filename": "drosSRA-0.3.0-py2.py3-none-any.whl", "has_sig": false, "md5_digest": "95691c6ed58a3dab30d17d75a9b77fe8", "packagetype": "bdist_wheel", "python_version": "py2.py3", "requires_python": null, "size": 3826, "upload_time": "2018-10-22T15:30:21", "url": "https://files.pythonhosted.org/packages/0e/a8/3b74eb3f0ea4019a2b2dde8de908f4c8e0bdde64b0c747a20affd5e98a2f/drosSRA-0.3.0-py2.py3-none-any.whl" }, { "comment_text": "", "digests": { "md5": "697d5cc049342d96777a3eea9a07131f", "sha256": "7d332525a6e36ac891019502cfa0874bbab3359918abded0767ea2975b3e3fc8" }, "downloads": -1, "filename": "drosSRA-0.3.0.tar.gz", "has_sig": false, "md5_digest": "697d5cc049342d96777a3eea9a07131f", "packagetype": "sdist", "python_version": "source", "requires_python": null, "size": 16150, "upload_time": "2018-10-22T15:30:22", "url": "https://files.pythonhosted.org/packages/6e/57/29e9de4f5add735ad5334dde505738ca6f82de19e83e147edf951e7b5f82/drosSRA-0.3.0.tar.gz" } ], "0.4.1": [ { "comment_text": "", "digests": { "md5": "3651255dfc3419bdf9d71f9af2848914", "sha256": "b9b687a8d257f9cce04f76736740accc7d28a9aeccc14d319036f41548fbf759" }, "downloads": -1, "filename": "drosSRA-0.4.1-py2.py3-none-any.whl", "has_sig": false, "md5_digest": "3651255dfc3419bdf9d71f9af2848914", "packagetype": "bdist_wheel", "python_version": "py2.py3", "requires_python": null, "size": 5095, "upload_time": "2018-10-24T18:27:41", "url": "https://files.pythonhosted.org/packages/2e/5d/9cc27811a7317f449bf6aa6dfb51171af8c313f5038e95173b74a3c43561/drosSRA-0.4.1-py2.py3-none-any.whl" }, { "comment_text": "", "digests": { "md5": "2e428d98cc0a4ea47e9d8821a28f783d", "sha256": "36e4eca12ca943f788423f679e9cd8c867c77395d618f39522ff89cf2756fa1d" }, "downloads": -1, "filename": "drosSRA-0.4.1-py3.6.egg", "has_sig": false, "md5_digest": "2e428d98cc0a4ea47e9d8821a28f783d", "packagetype": "bdist_egg", "python_version": "3.6", "requires_python": null, "size": 5801, "upload_time": "2018-10-24T18:27:42", "url": "https://files.pythonhosted.org/packages/31/c2/699b842e03d5d61faec000f3f2e0c7ea6be4253be7f47d79dccccd6ca265/drosSRA-0.4.1-py3.6.egg" }, { "comment_text": "", "digests": { "md5": "e0dae7f7219fe28845a73b3bdab98214", "sha256": "1a42e6bf74e7f64f0e84d4e73c6f17e3ee979dc484f4e610109b1d2f12f6ab98" }, "downloads": -1, "filename": "drosSRA-0.4.1.tar.gz", "has_sig": false, "md5_digest": "e0dae7f7219fe28845a73b3bdab98214", "packagetype": "sdist", "python_version": "source", "requires_python": null, "size": 10432, "upload_time": "2018-10-24T18:27:43", "url": "https://files.pythonhosted.org/packages/db/39/3aca96fed160e4e31bb48fdfb407761623ba680f31b06e425580496a10ff/drosSRA-0.4.1.tar.gz" } ], "0.4.2": [ { "comment_text": "", "digests": { "md5": "d1bccdbf474c0829f700f7d34ac11ad9", "sha256": "4bc624d7db30f7da46492040504c51b64d8c7aa2880cfa8831c7b25d7233b234" }, "downloads": -1, "filename": "drosSRA-0.4.2-py2.py3-none-any.whl", "has_sig": false, "md5_digest": "d1bccdbf474c0829f700f7d34ac11ad9", "packagetype": "bdist_wheel", "python_version": "py2.py3", "requires_python": null, "size": 440310, "upload_time": "2018-10-31T13:44:39", "url": "https://files.pythonhosted.org/packages/ee/f1/578dee6fb282d64f77097e2c50f5a39f6f96e7d383adf0d66f699f7f7dba/drosSRA-0.4.2-py2.py3-none-any.whl" }, { "comment_text": "", "digests": { "md5": "bf4ec05306d3dddb5d926668b812a234", "sha256": "7519a31fb46e9499fcb4480bcbb39a7d0a9aceef1d04051a51621203d2482072" }, "downloads": -1, "filename": "drosSRA-0.4.2-py3.6.egg", "has_sig": false, "md5_digest": "bf4ec05306d3dddb5d926668b812a234", "packagetype": "bdist_egg", "python_version": "3.6", "requires_python": null, "size": 440970, "upload_time": "2018-10-31T13:44:42", "url": "https://files.pythonhosted.org/packages/e7/1b/c77d3cf246cbe45ced379ebe4fff66a5ae399461a8b516c8eed5ac630af5/drosSRA-0.4.2-py3.6.egg" }, { "comment_text": "", "digests": { "md5": "511a16c9da9a9f614ee5e292097876db", "sha256": "7a00475e127c43410831f8808e3c2fcffa3a7b7ba752c925cb50277396e6f052" }, "downloads": -1, "filename": "drosSRA-0.4.2.tar.gz", "has_sig": false, "md5_digest": "511a16c9da9a9f614ee5e292097876db", "packagetype": "sdist", "python_version": "source", "requires_python": null, "size": 434990, "upload_time": "2018-10-31T13:44:43", "url": "https://files.pythonhosted.org/packages/5c/ca/58868cc345bc72deafba7f0e3519a657a47b018d57d58bac33f26600e599/drosSRA-0.4.2.tar.gz" } ], "0.4.3": [ { "comment_text": "", "digests": { "md5": "3e682c88ef7c2009be7d860c47f883ed", "sha256": "b7959e2262454d6bf61030550af66a0e60e0c933756af21d2efe2d4a814fb9a0" }, "downloads": -1, "filename": "drosSRA-0.4.3-py2.py3-none-any.whl", "has_sig": false, "md5_digest": "3e682c88ef7c2009be7d860c47f883ed", "packagetype": "bdist_wheel", "python_version": "py2.py3", "requires_python": null, "size": 440309, "upload_time": "2018-10-31T15:32:35", "url": "https://files.pythonhosted.org/packages/c7/51/6de2b2995864f22bdb2c0d6687f29a96be3b6af6df7509a8cb29885f18c2/drosSRA-0.4.3-py2.py3-none-any.whl" }, { "comment_text": "", "digests": { "md5": "850b58290fdf97c6d89754c3c957babc", "sha256": "43097bf05cae08626fe572cb17ac4a543dc2a2a6dc5d5b1e3a6db31831f12a9e" }, "downloads": -1, "filename": "drosSRA-0.4.3-py3.6.egg", "has_sig": false, "md5_digest": "850b58290fdf97c6d89754c3c957babc", "packagetype": "bdist_egg", "python_version": "3.6", "requires_python": null, "size": 440973, "upload_time": "2018-10-31T15:32:36", "url": "https://files.pythonhosted.org/packages/a5/6d/7f58283749298c5ccd920fa8c66cc4e2a3a42d9f2f6ce1c5d1ec6ca6f5aa/drosSRA-0.4.3-py3.6.egg" }, { "comment_text": "", "digests": { "md5": "d20f376ed8210251f6fd8687f024097b", "sha256": "85a0aa776195ff30ea8a556c9b28c0ea135b3689bb036a4c458215617ec8ec68" }, "downloads": -1, "filename": "drosSRA-0.4.3.tar.gz", "has_sig": false, "md5_digest": "d20f376ed8210251f6fd8687f024097b", "packagetype": "sdist", "python_version": "source", "requires_python": null, "size": 434978, "upload_time": "2018-10-31T15:32:39", "url": "https://files.pythonhosted.org/packages/e3/73/3aba4ebe5945a4861d0fde595bf67fb648d287c7a43a043f3643b21b8fbb/drosSRA-0.4.3.tar.gz" } ], "0.4.4": [ { "comment_text": "", "digests": { "md5": "c12b0cc2379dd3d4d02f3f9ffa450b9d", "sha256": "dc0f9e98c44a23237ce14807533b29586f50e0b5f29d1e2037d1abbbe6af6fe8" }, "downloads": -1, "filename": "drosSRA-0.4.4-py2.py3-none-any.whl", "has_sig": false, "md5_digest": "c12b0cc2379dd3d4d02f3f9ffa450b9d", "packagetype": "bdist_wheel", "python_version": "py2.py3", "requires_python": null, "size": 5092, "upload_time": "2018-10-31T15:58:07", "url": "https://files.pythonhosted.org/packages/2b/6a/2cd085ca4d7915d0c3eb20f0bf52aff6fa761aa2dad10a1ab20d9bfa585d/drosSRA-0.4.4-py2.py3-none-any.whl" }, { "comment_text": "", "digests": { "md5": "85b64c2533d30a13209c3acc6c2648e4", "sha256": "9fcc4787d623914bf57fbb995ed82803c7c0b5658cc6467002061a7de09b1aa8" }, "downloads": -1, "filename": "drosSRA-0.4.4-py3.6.egg", "has_sig": false, "md5_digest": "85b64c2533d30a13209c3acc6c2648e4", "packagetype": "bdist_egg", "python_version": "3.6", "requires_python": null, "size": 5803, "upload_time": "2018-10-31T15:58:08", "url": "https://files.pythonhosted.org/packages/fa/96/a5bcb3c306e501056256080877d785a05ae16c2c392d51703e3222ade3e4/drosSRA-0.4.4-py3.6.egg" }, { "comment_text": "", "digests": { "md5": "0bfb9085ba4b154c4afacddd0337d5ef", "sha256": "d108ed4d87df180de3c0dd26bb5b2b1bc96e0fc205588d510ddd670f95eec65c" }, "downloads": -1, "filename": "drosSRA-0.4.4.tar.gz", "has_sig": false, "md5_digest": "0bfb9085ba4b154c4afacddd0337d5ef", "packagetype": "sdist", "python_version": "source", "requires_python": null, "size": 434765, "upload_time": "2018-10-31T15:58:09", "url": "https://files.pythonhosted.org/packages/48/e6/e5bfacf93b055cdfebed51ff54f544d38fcd19534a8ee87c756ef5d2afa0/drosSRA-0.4.4.tar.gz" } ], "0.4.5": [ { "comment_text": "", "digests": { "md5": "d712c58811840fb22b5c9b316fa6169a", "sha256": "ddead4f76e4f652a9f6c354dd60e01050d19873dab28ef0e90b3dd016d183672" }, "downloads": -1, "filename": "drosSRA-0.4.5-py2.py3-none-any.whl", "has_sig": false, "md5_digest": "d712c58811840fb22b5c9b316fa6169a", "packagetype": "bdist_wheel", "python_version": "py2.py3", "requires_python": null, "size": 440357, "upload_time": "2018-10-31T19:00:14", "url": "https://files.pythonhosted.org/packages/2b/6e/f54a2b7865c9e02260710b87db4145a7f2852699adb5f88804790ad196a6/drosSRA-0.4.5-py2.py3-none-any.whl" }, { "comment_text": "", "digests": { "md5": "771839fd2e6e01851c3966548c56d91a", "sha256": "0da46e01303425c732d7b4e9f3b52da46255db624ab1d57c46d1277d721c619e" }, "downloads": -1, "filename": "drosSRA-0.4.5-py3.6.egg", "has_sig": false, "md5_digest": "771839fd2e6e01851c3966548c56d91a", "packagetype": "bdist_egg", "python_version": "3.6", "requires_python": null, "size": 441094, "upload_time": "2018-10-31T19:00:16", "url": "https://files.pythonhosted.org/packages/8c/d0/ad5c42f972b4e832373b758cf1d102ac9b3606bbca25e8bef64dd514d936/drosSRA-0.4.5-py3.6.egg" }, { "comment_text": "", "digests": { "md5": "2d70447614b1a9c161e8b2db622fdaca", "sha256": "c66e7e40f858472500a0e7144b5ed6454247a7463f3d06d61a8050a7ebcad291" }, "downloads": -1, "filename": "drosSRA-0.4.5.tar.gz", "has_sig": false, "md5_digest": "2d70447614b1a9c161e8b2db622fdaca", "packagetype": "sdist", "python_version": "source", "requires_python": null, "size": 435024, "upload_time": "2018-10-31T19:00:17", "url": "https://files.pythonhosted.org/packages/ab/00/5a08d30974d668ac1c9de9a6347173caa2c91bef5e12334843917e9c9754/drosSRA-0.4.5.tar.gz" } ] }, "urls": [ { "comment_text": "", "digests": { "md5": "d712c58811840fb22b5c9b316fa6169a", "sha256": "ddead4f76e4f652a9f6c354dd60e01050d19873dab28ef0e90b3dd016d183672" }, "downloads": -1, "filename": "drosSRA-0.4.5-py2.py3-none-any.whl", "has_sig": false, "md5_digest": "d712c58811840fb22b5c9b316fa6169a", "packagetype": "bdist_wheel", "python_version": "py2.py3", "requires_python": null, "size": 440357, "upload_time": "2018-10-31T19:00:14", "url": "https://files.pythonhosted.org/packages/2b/6e/f54a2b7865c9e02260710b87db4145a7f2852699adb5f88804790ad196a6/drosSRA-0.4.5-py2.py3-none-any.whl" }, { "comment_text": "", "digests": { "md5": "771839fd2e6e01851c3966548c56d91a", "sha256": "0da46e01303425c732d7b4e9f3b52da46255db624ab1d57c46d1277d721c619e" }, "downloads": -1, "filename": "drosSRA-0.4.5-py3.6.egg", "has_sig": false, "md5_digest": "771839fd2e6e01851c3966548c56d91a", "packagetype": "bdist_egg", "python_version": "3.6", "requires_python": null, "size": 441094, "upload_time": "2018-10-31T19:00:16", "url": "https://files.pythonhosted.org/packages/8c/d0/ad5c42f972b4e832373b758cf1d102ac9b3606bbca25e8bef64dd514d936/drosSRA-0.4.5-py3.6.egg" }, { "comment_text": "", "digests": { "md5": "2d70447614b1a9c161e8b2db622fdaca", "sha256": "c66e7e40f858472500a0e7144b5ed6454247a7463f3d06d61a8050a7ebcad291" }, "downloads": -1, "filename": "drosSRA-0.4.5.tar.gz", "has_sig": false, "md5_digest": "2d70447614b1a9c161e8b2db622fdaca", "packagetype": "sdist", "python_version": "source", "requires_python": null, "size": 435024, "upload_time": "2018-10-31T19:00:17", "url": "https://files.pythonhosted.org/packages/ab/00/5a08d30974d668ac1c9de9a6347173caa2c91bef5e12334843917e9c9754/drosSRA-0.4.5.tar.gz" } ] }