{ "info": { "author": "Jan Justi", "author_email": "jan.ma.justi@gmail.com", "bugtrack_url": null, "classifiers": [ "Programming Language :: Python", "Programming Language :: Python :: 3.6" ], "description": "# Deep Protein Polarity Analyser (DPPA)\n\nDPPA analyses each column of amino acids within .fasta files, from a target file, generating a report with all possible polarities listed.\n\n## Installation\n```bash\npip install dppa\n```\n\n## Examples\n\n- [Simple Execution](examples/example1-simple.md)\n- [Group Execution](examples/example2-group.md)\n\n## Usage\n### Command Line\n\n```bash\nusage: run-dppa [-h] [--reportName REPORTNAME] [--reportPath REPORTPATH]\n [--searchKP SEARCHKP] [--debug]\n TARGET REPORTTYPE\n\nAnalyse polarity on all protein alignment .fasta files from a target.\n\npositional arguments:\n TARGET Target .fasta file to be analysed.\n REPORTTYPE Output report file type.\n\noptional arguments:\n -h, --help show this help message and exit\n --reportName REPORTNAME\n Output report custom file name.\n --reportPath REPORTPATH\n Output report custom file path.\n --searchKP SEARCHKP Custom keyphrase to detect searchable sequences.\n --debug Turn debug messages on.\n```\n\n### Python\n\n```python\nimport dppa.core as solver\n\ntarget_path = 'example.fasta'\nreport_name = 'myrep'\nreport_type = 'all' # 'xls', 'csv' or 'all'\nreport_path = 'results-folder' # optional\n\nsolver.set_debug_mode(True) # optional\n\n# results[0] -> polarity results dataframe\n# results[1] -> alerts dataframe\nresults = solver.run(target_path)\n\n# option 1: export to the current folder\nsolver.export(results, report_type, report_name)\n# option 2: export to custom folder\nsolver.export(results, report_type, report_name, report_path)\n```\n\n", "description_content_type": "text/markdown", "docs_url": null, "download_url": "", "downloads": { "last_day": -1, "last_month": -1, "last_week": -1 }, "home_page": "https://github.com/janjusti/dppa", "keywords": "", 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