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        "author": "Marcel Martin",
        "author_email": "marcel.martin@scilifelab.se",
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            "Development Status :: 3 - Alpha",
            "Intended Audience :: Science/Research",
            "License :: OSI Approved :: MIT License",
            "Natural Language :: English",
            "Programming Language :: Cython",
            "Programming Language :: Python :: 3",
            "Topic :: Scientific/Engineering :: Bio-Informatics"
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        "description": "[![Travis](https://travis-ci.org/marcelm/dnaio.svg?branch=master)](https://travis-ci.org/marcelm/dnaio)\n[![PyPI](https://img.shields.io/pypi/v/dnaio.svg?branch=master)](https://pypi.python.org/pypi/dnaio)\n[![Codecov](https://codecov.io/gh/marcelm/dnaio/branch/master/graph/badge.svg)](https://codecov.io/gh/marcelm/dnaio)\n\n# dnaio parses FASTQ and FASTA\n\n`dnaio` is a Python 3 library for fast parsing of FASTQ and also FASTA files. The code was previously part of the\n[Cutadapt](https://cutadapt.readthedocs.io/) tool and has been improved since it has been split out.\n\n\n## Example usage\n\nThe main interface is the `dnaio.open` function:\n\n    import dnaio\n\n    with dnaio.open('reads.fastq.gz') as f:\n        bp = 0\n        for record in f:\n            bp += len(record)\n    print(f'The input file contains {bp/1E6:.1f} Mbp')\n\n\n## Features and supported file types\n\n- FASTQ input and output\n- FASTA input and output\n- Compressed input and output (`.gz`, `.bz2` and `.xz`, detected automatically)\n- Paired-end data in two files\n- Interleaved paired-end data in a single file\n- Files with DOS/Windows linebreaks can be read\n- FASTQ files with a second header line (after the `+`) are supported\n\n\n# Limitations\n\n- Multi-line FASTQ files are not supported. You shouldn\u2019t use them anyway.\n- FASTQ parsing is the focus of this library. The FASTA parser is not as optimized.\n\n\n# Links\n\n* [Source code](https://github.com/marcelm/dnaio/)\n* [Report an issue](https://github.com/marcelm/dnaio/issues)\n* [Project page on PyPI](https://pypi.python.org/pypi/dnaio/)\n\n\n",
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