{ "info": { "author": "Abraham D. Flaxman", "author_email": "abie@uw.edu", "bugtrack_url": null, "classifiers": [ "Intended Audience :: Developers", "Intended Audience :: Education", "Intended Audience :: Science/Research", "License :: OSI Approved :: GNU General Public License v3 or later (GPLv3+)", "Natural Language :: English", "Operating System :: MacOS :: MacOS X", "Operating System :: Microsoft :: Windows", "Operating System :: POSIX", "Operating System :: POSIX :: BSD", "Operating System :: POSIX :: Linux", "Programming Language :: Python", "Programming Language :: Python :: 3.6", "Programming Language :: Python :: Implementation :: CPython", "Topic :: Education", "Topic :: Scientific/Engineering", "Topic :: Scientific/Engineering :: Mathematics", "Topic :: Scientific/Engineering :: Medical Science Apps.", "Topic :: Software Development :: Libraries" ], "description": ".. image:: https://travis-ci.org/ihmeuw/dismod_mr.svg?branch=master\n :target: https://travis-ci.org/ihmeuw/dismod_mr\n :alt: Latest Version\n\n============\nIntroduction\n============\n\nThis project is the descriptive epidemiological meta-regression tool,\nDisMod-MR, which grew out of the Global Burden of Disease (GBD) Study\n2010. DisMod-MR has been developed for the Institute of Health\nMetrics and Evaluation at the University of Washington from 2008-2013.\n\n.. contents::\n\nExamples\n--------\n\n`A motivating example: descriptive epidemiological meta-regression of Parkinson's Disease `_\n\n`All examples `_\n\nInstallation\n------------\n\nDismod MR requires PyMC2 which does not play nicely with normal Python\ninstallation tools. Fortunately, ``conda`` has solved this issue for us.\nSo first you'll need to setup a conda environment\n(after `installing conda, if necessary `_)\nand install ``pymc``. Then you can install ``dismod_mr`` using ``pip``.\n\n.. code-block:: sh\n\n conda create --name=dismod_mr python=3.6 pymc\n conda activate dismod_mr\n pip install dismod_mr\n\nInstalling from source\n++++++++++++++++++++++\n\nIf you want to install ``dismod_mr`` locally in an editable mode, the\ninstructions are very similar. We'll clone the repository and install it\nfrom a local directory instead of using ``pip`` to grab it from the Python\npackage index.\n\n.. code-block:: sh\n\n conda create --name=dismod_mr python=3.6 pymc\n conda activate dismod_mr\n git clone git@github.com:ihmeuw/dismod_mr.git\n cd dismod_mr\n pip install -e .\n\nCoding Practices\n----------------\n\n* Write tests before code\n* Write equations before tests\n\n* Test quantitatively with simulation data\n* Test qualitatively with real data\n* Automate tests\n\n* Use a package instead of DIY\n* Test the package\n\n* Optimize code later\n* Optimize code for readability before speed\n\n* `.py` files should be short, less than 500 lines\n* Functions should be short, less than 25 lines", "description_content_type": "", "docs_url": null, "download_url": "", "downloads": { "last_day": -1, "last_month": -1, "last_week": -1 }, "home_page": "https://github.com/ihmeuw/dismod_mr", "keywords": "", "license": "GNU GPLv3", "maintainer": "", "maintainer_email": "", "name": "dismod-mr", "package_url": "https://pypi.org/project/dismod-mr/", "platform": "", "project_url": "https://pypi.org/project/dismod-mr/", "project_urls": { "Homepage": "https://github.com/ihmeuw/dismod_mr" }, "release_url": "https://pypi.org/project/dismod-mr/1.1.0/", "requires_dist": null, "requires_python": "", "summary": "Integrative Meta-Regression Framework for Descriptive Epidemmiology", "version": "1.1.0" }, "last_serial": 5466484, "releases": { "1.1.0": [ { "comment_text": "", "digests": { "md5": "9487dd568579af2e003e5001cb335ab7", "sha256": "3362688043467e2c3b4064978a010bba5952d6c6c57b3814ce1c64a1bec68c32" }, "downloads": -1, "filename": "dismod_mr-1.1.0.tar.gz", "has_sig": false, "md5_digest": "9487dd568579af2e003e5001cb335ab7", "packagetype": "sdist", "python_version": "source", "requires_python": null, "size": 53075, "upload_time": "2019-06-29T22:33:40", "url": "https://files.pythonhosted.org/packages/23/c9/cdbaf5ebfa633d5540f36f0b800f06600c6bcb6831a28f52e4e9e80be1bf/dismod_mr-1.1.0.tar.gz" } ] }, "urls": [ { "comment_text": "", "digests": { "md5": "9487dd568579af2e003e5001cb335ab7", "sha256": "3362688043467e2c3b4064978a010bba5952d6c6c57b3814ce1c64a1bec68c32" }, "downloads": -1, "filename": "dismod_mr-1.1.0.tar.gz", "has_sig": false, "md5_digest": "9487dd568579af2e003e5001cb335ab7", "packagetype": "sdist", "python_version": "source", "requires_python": null, "size": 53075, "upload_time": "2019-06-29T22:33:40", "url": "https://files.pythonhosted.org/packages/23/c9/cdbaf5ebfa633d5540f36f0b800f06600c6bcb6831a28f52e4e9e80be1bf/dismod_mr-1.1.0.tar.gz" } ] }