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        "author": "Henning Timm, Till Hartmann",
        "author_email": "henning.timm@tu-dortmund.de, till.hartmann@tu-dortmund.de",
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            "Development Status :: 5 - Production/Stable",
            "Intended Audience :: Developers",
            "Intended Audience :: Science/Research",
            "License :: OSI Approved :: MIT License",
            "Natural Language :: English",
            "Programming Language :: Cython",
            "Programming Language :: Python :: 3",
            "Programming Language :: Python :: 3.5",
            "Programming Language :: Python :: 3.6",
            "Programming Language :: Python :: 3.7",
            "Programming Language :: Python :: 3.8",
            "Programming Language :: Python :: 3.9",
            "Programming Language :: Python :: 3.10",
            "Topic :: Scientific/Engineering :: Bio-Informatics",
            "Topic :: Scientific/Engineering :: Medical Science Apps."
        ],
        "description": ".. image:: https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat\n   :target: https://bioconda.github.io/recipes/dinopy/README.html\n\n.. image:: https://img.shields.io/pypi/v/dinopy.svg?style=flat\n   :target: https://pypi.python.org/pypi/dinopy\n\n.. image:: https://img.shields.io/bitbucket/pipelines/HenningTimm/dinopy\n   :target: https://bitbucket.org/HenningTimm/dinopy/addon/pipelines/home\n\n.. image:: https://img.shields.io/readthedocs/dinopy\n   :target: https://dinopy.readthedocs.io/en/latest/\n\n.. image:: https://img.shields.io/pypi/l/dinopy\n   :target: https://opensource.org/licenses/MIT\n\n.. image:: https://zenodo.org/badge/DOI/10.5281/zenodo.4389307.svg\n   :target: https://doi.org/10.5281/zenodo.4389307\n\n\nDinopy - DNA input and output for Python and Cython\n===================================================\n   \nDinopy's goal is to make files containing biological sequences easily\nand efficiently accessible for Python and Cython programmers, allowing them to\nfocus on their application instead of file-io.\n\n::\n\n    #!python\n\n    import dinopy\n    fq_reader = dinopy.FastqReader(\"reads.fastq\")\n    for sequence, name, quality in fq_reader.reads(quality_values=True):\n        if some_function(quality):\n            analyze(seq)\n\nFeatures\n~~~~~~~~\n\n-  Easy to use reader and writer for FASTA-, FASTQ-, and SAM-files.\n-  Specifiable data type and representation for return values (bytes,\n   bytearrays, strings and integers see\n   `dtype <https://dinopy.readthedocs.org/en/latest/encoding/>`__ for\n   more information).\n-  Implemented in `Cython <http://cython.org/>`__ for additional speedup.\n-  Offers a `Cython API <https://dinopy.readthedocs.org/en/latest/cython_integration/>`__ to avoid introducing Python code into Cython projects.\n-  Works directly on gzipped files.\n-  Iterators for q-grams of a sequence (also allowing shaped q-grams).\n-  (Reverse) complement.\n-  Chromosome selection from FASTA files.\n\n\nGetting Started\n~~~~~~~~~~~~~~~\n\n-  If you are new to dinopy you can get started by following the\n   first-steps\n   `tutorial <https://dinopy.readthedocs.org/en/latest/getting-started/introduction/>`__.\n-  A full list of features, as well as the documentation, can be found\n   `here <https://dinopy.readthedocs.org/en/latest/>`__.\n\nInstallation\n~~~~~~~~~~~~\n\nDinopy can be installed with pip:\n\n::\n\n   $ pip install dinopy\n\nor with conda:\n\n::\n\n       $ conda install -c bioconda dinopy\n\nAdditionally, dinopy can be downloaded from Bitbucket and compiled using its\nsetup.py:\n\n1. Download source code from\n   `bitbucket <https://bitbucket.org/HenningTimm/dinopy>`__.\n2. Install globally:\n\n   ::\n\n       $ python setup.py install\n\n   or only for the current user:\n\n   ::\n\n       $ python setup.py install --user\n\n3. Use dinopy:\n\n   ::\n\n       $ python\n\n       >>> import dinopy\n\nInstallation requirements\n~~~~~~~~~~~~~~~~~~~~~~~~~\n\n-  `python <https://www.python.org/>`__ >= 3.5\n-  `numpy <http://www.numpy.org/>`__ >= 1.17\n-  `cython <http://cython.org/>`__ >= 0.22\n-  C and C++ compilers, for example from ``build-essentials`` (Linux) or ``Xcode`` (OSX)\n\nWe recommend using\n`anaconda <https://www.continuum.io/downloads>`__\nand the\n`bioconda channel <https://github.com/bioconda/bioconda-recipes>`__.\n\n::\n\n    $ conda config --add channels bioconda\n    $ conda create -n dinoenv dinopy\n\nPlatform support\n~~~~~~~~~~~~~~~~\n\nDinopy has been tested on Ubuntu, Arch Linux and OS X (Yosemite and El\nCapitan).\n\nWe do not officially support Windows - dinopy will probably work, but\nthere might be problems due to different linebreak styles; we assume\n``\\n`` as separator but the probability to encounter files with ``\\r\\n``\nas line-separator might be higher on Windows.\n\n\nContact\n=======\n\nIf you want to report a bug or want to suggest a new feature, feel free to do so over at bitbucket_.\n\n.. _bitbucket: https://bitbucket.org/HenningTimm/dinopy\n\nEmail:\n    * Henning Timm: name.surname <at> tu-dortmund.de\n    * Till Hartmann: name.surname <at> tu-dortmund.de\n\n\nLicense\n~~~~~~~\n\nDinopy is Open Source and licensed under the `MIT\nLicense <http://opensource.org/licenses/MIT>`__.\n\n\n",
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