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        "author": "Guanliang Meng",
        "author_email": "mengguanliang@foxmail.com",
        "bugtrack_url": null,
        "classifiers": [
            "Development Status :: 3 - Alpha",
            "Intended Audience :: Science/Research",
            "License :: OSI Approved :: GNU General Public License v3 or later (GPLv3+)",
            "Operating System :: MacOS :: MacOS X",
            "Operating System :: Microsoft :: Windows",
            "Operating System :: POSIX :: Linux",
            "Programming Language :: Python :: 3",
            "Topic :: Scientific/Engineering :: Bio-Informatics"
        ],
        "description": "# depth_stat\n\n## 1 Introduction\n\n`depth_stat` is a tool to extract the sequence depth from depthfile and do some statstics.\n\nsee `https://github.com/linzhi2013/depth_stat`.\n\n## 2 Installation\n\n    pip install depth_stat\n\nThere will be a command `depth_stat` created under the same directory as your `pip` command.\n\n## 3 Usage\n\n### 3.1 command line\n\n    $ depth_stat\n    usage: depth_stat [-h] -i <file> [-q <str>] [-a <int>] [-b <int>]\n                         [-f <file>]\n\n    To extract the sequence depth from depthfile.\n\n    The depthfile content format:\n    seqid1 depth1 depth2 depth3 ...\n    seqid2 depth1 depth2 depth3 ...\n\n    This script is part of the MitoZ project, by Guanliang MENG.\n    See https://github.com/linzhi2013/depth_stat.\n\n\n    optional arguments:\n      -h, --help  show this help message and exit\n      -i <file>   input depthfile\n      -q <str>    sequence id\n      -a <int>    the start position, Python-style (0-leftmost)\n      -b <int>    the end position, Python-style for slicing\n      -f <file>   a file of 'seqid start end' list on each line\n\n\n### 3.2 in a Python3 script\n\n    In [1]: from depth_stat import SeqDepth\n\n    In [2]: sdj = SeqDepth('DRR095708_mitoscaf.fa.fsa.depth')\n\n    In [3]: sdj.extract_range_depth(seqid='scaffold44450', start=0, end=20)\n    Out[3]: [1, 1, 1, 1, 4, 4, 4, 4, 5, 5, 5, 6, 7, 7, 8, 8, 8, 8, 8, 8]\n\n    In [4]: sdj.range_depth_stat(seqid='scaffold44450', start=0, end=20)\n    Out[4]: ('scaffold44450', 0, 20, 1, 5.15, 8)\n\n    In [5]: sdj.range_depth_freq(seqid='scaffold44450', start=0, end=20)\n    Out[5]: [(1, 4), (4, 4), (5, 3), (6, 1), (7, 2), (8, 6)]\n\n\n\n## Author\nGuanliang MENG\n\n## Citation\nThis script is part of the package `MitoZ`, when you use the script in your work, please cite:\n    \n    MitoZ: A toolkit for mitochondrial genome assembly, annotation and visualization with NGS data. Guangliang Meng, Yiyuan Li, Chentao Yang, Shanlin Liu (in manuscript)",
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        "name": "depth-stat",
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        "summary": "To extract the sequence depth from depthfile.",
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