{
    "info": {
        "author": "Jan Justi",
        "author_email": "jan.ma.justi@gmail.com",
        "bugtrack_url": null,
        "classifiers": [
            "Programming Language :: Python",
            "Programming Language :: Python :: 3.6"
        ],
        "description": "# Deep Codon Mutation Analyser (DCMA)\n\nDCMA analyses each column of codons within .fasta files, from a target file, generating a report with all possible mutations listed.\n\n## Installation\n```bash\npip install dcma\n```\n\n## Examples\n\n- [Simple Execution](examples/example1-simple.md)\n- [Group Execution](examples/example2-group.md)\n\n## Usage\n### Command Line\n\n```bash\nusage: run-dcma [-h] [--reportName REPORTNAME] [--reportPath REPORTPATH]\n                [--searchKP SEARCHKP] [--debug]\n                TARGET REPORTTYPE\n\nAnalyse mutation on all nucleotide alignment .fasta files from a target.\n\npositional arguments:\n  TARGET                Target .fasta file to be analysed.\n  REPORTTYPE            Output report file type.\n\noptional arguments:\n  -h, --help            show this help message and exit\n  --reportName REPORTNAME\n                        Output report custom file name.\n  --reportPath REPORTPATH\n                        Output report custom file path.\n  --searchKP SEARCHKP   Custom keyphrase to detect searchable sequences.\n  --debug               Turn debug messages on.\n```\n\n### Python\n\n```python\nimport dcma.core as solver\n\ntarget_path = 'example.fasta'\nreport_name = 'myrep'\nreport_type = 'all' # 'xls', 'csv' or 'all'\nreport_path = 'results-folder' # optional\n\nsolver.set_debug_mode(True) # optional\n\n# results[0] -> polarity results dataframe\n# results[1] -> alerts dataframe\nresults = solver.run(target_path)\n\n# option 1: export to the current folder\nsolver.export(results, report_type, report_name)\n# option 2: export to custom folder\nsolver.export(results, report_type, report_name, report_path)\n```\n\n",
        "description_content_type": "text/markdown",
        "docs_url": null,
        "download_url": "",
        "downloads": {
            "last_day": -1,
            "last_month": -1,
            "last_week": -1
        },
        "home_page": "https://github.com/janjusti/dcma",
        "keywords": "",
        "license": "MIT",
        "maintainer": "",
        "maintainer_email": "",
        "name": "dcma",
        "package_url": "https://pypi.org/project/dcma/",
        "platform": "",
        "project_url": "https://pypi.org/project/dcma/",
        "project_urls": {
            "Homepage": "https://github.com/janjusti/dcma"
        },
        "release_url": "https://pypi.org/project/dcma/0.1.2/",
        "requires_dist": [
            "tqdm (>=4.31.1)",
            "anytree (>=2.6.0)",
            "pandas (>=0.24.2)",
            "biopython (>=1.73)",
            "openpyxl (>=2.6.2)",
            "styleframe (>=2.0.3)"
        ],
        "requires_python": "",
        "summary": "Deep Codon Mutation Analyser",
        "version": "0.1.2"
    },
    "last_serial": 5718086,
    "releases": {
        "0.1.0": [
            {
                "comment_text": "",
                "digests": {
                    "md5": "99571e60518cad42c515da105ca26613",
                    "sha256": "dbb1da7bc9ca98ce8565cd07b44cdaca6610a8422bc05f87ef04329c01aa9711"
                },
                "downloads": -1,
                "filename": "dcma-0.1.0-py3-none-any.whl",
                "has_sig": false,
                "md5_digest": "99571e60518cad42c515da105ca26613",
                "packagetype": "bdist_wheel",
                "python_version": "py3",
                "requires_python": null,
                "size": 11083,
                "upload_time": "2019-07-10T17:47:30",
                "url": "https://files.pythonhosted.org/packages/ca/ce/2836f92204b4db4f3e7af54992771469b0d3f69245b44f6d7d9f4e1db254/dcma-0.1.0-py3-none-any.whl"
            },
            {
                "comment_text": "",
                "digests": {
                    "md5": "ca99bc417473f5019a99e823769ffb07",
                    "sha256": "70b36963bf5466b98170e402f1e4c9b253e70264c121b808651e40383d12a12b"
                },
                "downloads": -1,
                "filename": "dcma-0.1.0.tar.gz",
                "has_sig": false,
                "md5_digest": "ca99bc417473f5019a99e823769ffb07",
                "packagetype": "sdist",
                "python_version": "source",
                "requires_python": null,
                "size": 8872,
                "upload_time": "2019-07-10T17:47:32",
                "url": "https://files.pythonhosted.org/packages/66/e2/a9c103f027f48220d64bba6e6b3dd9028d22eb3f4b07a32c4e8fa2ba7999/dcma-0.1.0.tar.gz"
            }
        ],
        "0.1.2": [
            {
                "comment_text": "",
                "digests": {
                    "md5": "6fa9e34fce65661e96c782f9b59535d0",
                    "sha256": "9e1e9232e147f569af8acad97baf8d308498cbe4585beac44d2eb1f4a02d3375"
                },
                "downloads": -1,
                "filename": "dcma-0.1.2-py3-none-any.whl",
                "has_sig": false,
                "md5_digest": "6fa9e34fce65661e96c782f9b59535d0",
                "packagetype": "bdist_wheel",
                "python_version": "py3",
                "requires_python": null,
                "size": 11245,
                "upload_time": "2019-08-23T00:59:34",
                "url": "https://files.pythonhosted.org/packages/19/8f/f85da93e26752399b9c75f9475d67968bdf8530b96e98e1b10a682b4e13e/dcma-0.1.2-py3-none-any.whl"
            },
            {
                "comment_text": "",
                "digests": {
                    "md5": "a04f688fe2f7bd1b6b1bea817564b32f",
                    "sha256": "80da780cfd3f0f2193ba3038454c22ac239c5f5b83c1df4b49dc690d8f074fde"
                },
                "downloads": -1,
                "filename": "dcma-0.1.2.tar.gz",
                "has_sig": false,
                "md5_digest": "a04f688fe2f7bd1b6b1bea817564b32f",
                "packagetype": "sdist",
                "python_version": "source",
                "requires_python": null,
                "size": 9077,
                "upload_time": "2019-08-23T00:59:36",
                "url": "https://files.pythonhosted.org/packages/b3/d8/e6f0b7f3015cc069bcfaa16ef5fa80c146f720fc98e28c268aa05aeb3ec9/dcma-0.1.2.tar.gz"
            }
        ]
    },
    "urls": [
        {
            "comment_text": "",
            "digests": {
                "md5": "6fa9e34fce65661e96c782f9b59535d0",
                "sha256": "9e1e9232e147f569af8acad97baf8d308498cbe4585beac44d2eb1f4a02d3375"
            },
            "downloads": -1,
            "filename": "dcma-0.1.2-py3-none-any.whl",
            "has_sig": false,
            "md5_digest": "6fa9e34fce65661e96c782f9b59535d0",
            "packagetype": "bdist_wheel",
            "python_version": "py3",
            "requires_python": null,
            "size": 11245,
            "upload_time": "2019-08-23T00:59:34",
            "url": "https://files.pythonhosted.org/packages/19/8f/f85da93e26752399b9c75f9475d67968bdf8530b96e98e1b10a682b4e13e/dcma-0.1.2-py3-none-any.whl"
        },
        {
            "comment_text": "",
            "digests": {
                "md5": "a04f688fe2f7bd1b6b1bea817564b32f",
                "sha256": "80da780cfd3f0f2193ba3038454c22ac239c5f5b83c1df4b49dc690d8f074fde"
            },
            "downloads": -1,
            "filename": "dcma-0.1.2.tar.gz",
            "has_sig": false,
            "md5_digest": "a04f688fe2f7bd1b6b1bea817564b32f",
            "packagetype": "sdist",
            "python_version": "source",
            "requires_python": null,
            "size": 9077,
            "upload_time": "2019-08-23T00:59:36",
            "url": "https://files.pythonhosted.org/packages/b3/d8/e6f0b7f3015cc069bcfaa16ef5fa80c146f720fc98e28c268aa05aeb3ec9/dcma-0.1.2.tar.gz"
        }
    ]
}