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        "author": "Kenzo-Hugo Hillion and Herve Menager",
        "author_email": "kehillio@pasteur.fr",
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        "classifiers": [
            "Development Status :: 4 - Beta",
            "Environment :: Console",
            "Intended Audience :: Developers",
            "Intended Audience :: Science/Research",
            "Topic :: Scientific/Engineering :: Bio-Informatics"
        ],
        "description": "# python-cwlgen\n\n[![Build Status](https://travis-ci.org/common-workflow-language/python-cwlgen.svg?branch=master)](https://travis-ci.org/common-workflow-language/python-cwlgen)\n[![codecov](https://codecov.io/gh/common-workflow-language/python-cwlgen/branch/master/graph/badge.svg)](https://codecov.io/gh/common-workflow-language/python-cwlgen)\n[![Documentation Status](https://readthedocs.org/projects/python-cwlgen/badge/?version=latest)](http://python-cwlgen.readthedocs.io/en/latest/?badge=latest)\n[![PyPI version](https://badge.fury.io/py/cwlgen.svg)](https://badge.fury.io/py/cwlgen)\n\nPython-cwlgen is a python library for the generation of CWL programmatically.\nIt supports the generation of CommandLineTool, Workflow and DockerRequirement.\nThe library works for both Python 2.7.12+ and 3.6.0.\n\n------------------------\n\n\n# Common Workflow Language\n\n[Common Workflow Language (CWL)](https://www.commonwl.org/v1.0/index.html) is a language to describe workflows. \nThe [user guide](http://www.commonwl.org/user_guide/01-introduction/index.html)\n gives a gentle explanation of what its goals are, but broadly:\n \n 1. Stop writing bash scripts for long complex jobs.\n 2. Take pipelines anywhere (portability).\n 3. Enforce reproducibility guidelines.\n \nThis python repository is a python wrapper for _most_ of the classes (work in progress), \nallowing you to build the structure of the workflow in Python and have this module generate and export CWL for you.\n\n**Nb:** This doesn't check the logic of Workflows or CommandLineTools for you.  \n[CWLTool](https://github.com/common-workflow-language/cwltool) has a `--validate` mode that you can use.\n\n## Quick-start guide\n\nYou can install python-cwlgen through pip with the following command:\n\n```bash\npip install cwlgen\n```\n\n### How it works?\n\nThis repository contains a number of python classes that mirror the CWL specifications ([Workflow](https://www.commonwl.org/v1.0/Workflow.html)| \n[CommandLineTool](https://www.commonwl.org/v1.0/CommandLineTool.html)). In essence, each class's initializer has all \nof the properties it expects, which may be another object. The classes include the relevant docstrings to give you \ncontext of classes and their properties.\n\nThe `examples/` folder contains some simple examples, however in essence you simply initialize the class you're \ntrying to build. An initializer for a class has all of the properties it expects which may be another object.\n\n\n_Creating a CommandLineTool_\n```python\nimport cwlgen\n\ntool_object = cwlgen.CommandLineTool(tool_id=\"echo-tool\", base_command=\"echo\", label=None, doc=None,\n                 cwl_version=\"v1.0\", stdin=None, stderr=None, stdout=None, path=None)\ntool_object.inputs.append(\n    cwlgen.CommandInputParameter(\"myParamId\", param_type=\"string\", label=None, secondary_files=None, param_format=None,\n                 streamable=None, doc=None, input_binding=None, default=None)\n)\n\n# to get the dictionary representation:\ndict_to_export = tool_object.get_dict()\n\n# to get the string representation (YAML)\nyaml_export = tool_object.export_string()\n\n# print to console\ntool_object.export()\n\n# print to file\nwith open(\"echotool.cwl\", \"w\") as f:\n    tool_object.export(f)\n```\n\n## References\n\nCWL is developed by an informal, multi-vendor working group consisting of organizations and individuals \naiming to enable scientists to share data analysis workflows. \nThe [CWL project is on Github](https://github.com/common-workflow-language/common-workflow-language).",
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