{ "info": { "author": "Darrin Schultz", "author_email": "dts@ucsc.edu", "bugtrack_url": null, "classifiers": [ "Development Status :: 2 - Pre-Alpha", "Intended Audience :: Science/Research", "License :: OSI Approved :: GNU General Public License v3 (GPLv3)", "Operating System :: POSIX :: Linux", "Programming Language :: Python :: 3", "Programming Language :: Python :: 3.5", "Topic :: Scientific/Engineering :: Bio-Informatics" ], "description": "\n'cuttlery' is a package for determining the codon usage table of input\nsequences. Instead of calculating an absolute codon usage frequency\nfor all observed genes as other packages do, cuttlery handles codon\nusage frequency as a distribution for each codon. The cuttlery package\nalso contains tools for plotting codon usage information, calculating\nif an unknown ORF is likely to belong to coding or noncoding sequence,\ncalculating nucleotide diversity of protein alignments and plotting\nthe results, as well as looking for synonymous and nonsynonymous\nmutation heterogeneity in protein alignments.\nhttps://github.com/conchoecia/cuttlery\n\n\n", "description_content_type": "", "docs_url": null, "download_url": "", "downloads": { "last_day": -1, "last_month": -1, "last_week": -1 }, "home_page": "https://github.com/conchoecia/cuttlery", "keywords": "", "license": "GPLv3", "maintainer": "", "maintainer_email": "", "name": "cuttlery", "package_url": "https://pypi.org/project/cuttlery/", "platform": "", "project_url": "https://pypi.org/project/cuttlery/", "project_urls": { "Homepage": "https://github.com/conchoecia/cuttlery" }, "release_url": "https://pypi.org/project/cuttlery/0.1614/", "requires_dist": [ "biopython (>=1.68)", "matplotlib (>=2.0.2)", "numpy (>=1.12.1)", "pandas (>=0.20.1)", "seaborn" ], "requires_python": "", "summary": "Codon Usage Table Tools-lery.", "version": "0.1614" }, "last_serial": 5269351, "releases": { "0.15": [ { "comment_text": "", "digests": { "md5": "918e5a623ff2fdb23ecaa50248eea22e", "sha256": "47f531cbd765126dce6b50a402f2eeac6842a26bb7c5859ee07dbebcf2618221" }, "downloads": -1, "filename": "cuttlery-0.15-py3-none-any.whl", "has_sig": false, "md5_digest": "918e5a623ff2fdb23ecaa50248eea22e", "packagetype": "bdist_wheel", "python_version": "py3", "requires_python": null, "size": 53233, "upload_time": "2019-04-22T17:58:12", "url": "https://files.pythonhosted.org/packages/ea/b5/3d4661b8a13a94976c99ee0fc1a8b595fd96ca2b4369d6f48fa8b1d34d07/cuttlery-0.15-py3-none-any.whl" }, { "comment_text": "", "digests": { "md5": "8157c0b1bad1e7d8beaa95443f4fe4be", "sha256": "4a059bf827696a0dd0e17b100eed57d0743e36b2d03009fd6b40bda5324851de" }, "downloads": -1, "filename": "cuttlery-0.15.tar.gz", "has_sig": false, "md5_digest": "8157c0b1bad1e7d8beaa95443f4fe4be", "packagetype": "sdist", "python_version": "source", "requires_python": null, "size": 44632, "upload_time": "2019-04-22T17:58:16", "url": "https://files.pythonhosted.org/packages/b0/c1/f6834b974578a1d1013aed3ffb183a55aa77eec86b432727bdeb8e32e5a2/cuttlery-0.15.tar.gz" } ], "0.16": [ { "comment_text": "", "digests": { "md5": "72b97ff1bce237e9c272b2133558709b", "sha256": "d7633909a8cd2d84d63a894ed747e86af618ca57ca6f19dc85b21b2b896500ef" }, "downloads": -1, "filename": "cuttlery-0.16-py3-none-any.whl", "has_sig": false, "md5_digest": "72b97ff1bce237e9c272b2133558709b", "packagetype": "bdist_wheel", "python_version": "py3", "requires_python": null, "size": 54191, "upload_time": "2019-05-14T18:28:58", "url": "https://files.pythonhosted.org/packages/28/7f/a86f4b609165c59cc9789af0f21ec6d016ce0dcc41fd95f859a6b2e2436e/cuttlery-0.16-py3-none-any.whl" }, { "comment_text": "", "digests": { "md5": "2a5db76afd10581c130e280af3a67cfd", "sha256": "9cb5b6ffebb9a0908ee63b864fa6c977c42dfbb788df6624f6a4b0fbdd9a589e" }, "downloads": -1, "filename": "cuttlery-0.16.tar.gz", "has_sig": false, "md5_digest": "2a5db76afd10581c130e280af3a67cfd", "packagetype": "sdist", "python_version": "source", "requires_python": null, "size": 45605, "upload_time": "2019-05-14T18:28:59", "url": "https://files.pythonhosted.org/packages/d4/bd/b14e51db9f32edbfc1e4570f3da8f668aaad2fce93688d28225dd51633cf/cuttlery-0.16.tar.gz" } ], "0.1611": [ { "comment_text": "", "digests": { "md5": "33b1971a053c5350eb197a928f0e2ad3", "sha256": "3b527b931a36005cdd249252e828f9081cf4f301c4224e08545b55ae25ace11f" }, "downloads": -1, "filename": "cuttlery-0.1611-py3-none-any.whl", "has_sig": false, "md5_digest": "33b1971a053c5350eb197a928f0e2ad3", "packagetype": "bdist_wheel", "python_version": "py3", "requires_python": null, "size": 54225, "upload_time": "2019-05-14T20:44:40", "url": "https://files.pythonhosted.org/packages/10/c5/f00eb3633c67c55c8802defcb5cddf16095693766645f6e83b52bc933e44/cuttlery-0.1611-py3-none-any.whl" }, { "comment_text": "", "digests": { "md5": "be43dcda4d30737e6eda24d1ae97c1ce", "sha256": "63a00b42cb94e03eb01e155ded953da7b99d9f0b7ee67625aaf049a1007f8571" }, "downloads": -1, "filename": "cuttlery-0.1611.tar.gz", "has_sig": false, "md5_digest": "be43dcda4d30737e6eda24d1ae97c1ce", "packagetype": "sdist", "python_version": "source", "requires_python": null, "size": 46394, "upload_time": "2019-05-14T20:44:42", "url": "https://files.pythonhosted.org/packages/94/3b/0ad384900b68abdea6a87215e04e6973e5a166863cea53010bff3aa14593/cuttlery-0.1611.tar.gz" } ], "0.1612": [ { "comment_text": "", "digests": { "md5": "c99cfaf542e139da65c2e990214ed010", "sha256": "45e3a0d99d903ec9a4099180ad82f82aa8895e30595fa6f9b35865f5e7c32649" }, "downloads": -1, "filename": "cuttlery-0.1612-py3-none-any.whl", "has_sig": false, "md5_digest": "c99cfaf542e139da65c2e990214ed010", "packagetype": "bdist_wheel", "python_version": "py3", "requires_python": null, "size": 54225, "upload_time": "2019-05-14T20:47:19", "url": "https://files.pythonhosted.org/packages/a8/77/2269d79f3539796e4e44feecb2b81343adb7979a8035a016e9c223e07845/cuttlery-0.1612-py3-none-any.whl" }, { "comment_text": "", "digests": { "md5": "8731dfc4db0950b63103820989c895e9", "sha256": "75c82cf0ca9c1716598dbacba1588b80bb90e51f73086c210332a5e160306f06" }, "downloads": -1, "filename": "cuttlery-0.1612.tar.gz", "has_sig": false, "md5_digest": "8731dfc4db0950b63103820989c895e9", "packagetype": "sdist", "python_version": "source", "requires_python": null, "size": 46396, "upload_time": "2019-05-14T20:47:21", "url": "https://files.pythonhosted.org/packages/85/d9/8d09c21e58d92afd3dd1c669b4f56fc6e5fa6fb7634e7e541eeb21bdef9a/cuttlery-0.1612.tar.gz" } ], "0.1613": [ { "comment_text": "", "digests": { "md5": "f25e68862be192b9d5581644c51812f0", "sha256": "c33a1ab9374d1893cee24e626ba1e732d1427e45685bb0ed71c0a76267175f78" }, "downloads": -1, "filename": "cuttlery-0.1613-py3-none-any.whl", "has_sig": false, "md5_digest": "f25e68862be192b9d5581644c51812f0", "packagetype": "bdist_wheel", "python_version": "py3", "requires_python": null, "size": 54226, "upload_time": "2019-05-14T20:55:40", "url": "https://files.pythonhosted.org/packages/10/af/362191c953cca83752a91fad60156b06367eb39abcabaa3cd0046990464f/cuttlery-0.1613-py3-none-any.whl" }, { "comment_text": "", "digests": { "md5": "e59519c363b3a7dcb92732e56a17bc1d", "sha256": "d8a28a4f32d3b7328a1e06285a5237e19fa0386783b0e2726de5c2e78a1b3fef" }, "downloads": -1, "filename": "cuttlery-0.1613.tar.gz", "has_sig": false, "md5_digest": "e59519c363b3a7dcb92732e56a17bc1d", "packagetype": "sdist", "python_version": "source", "requires_python": null, "size": 46399, "upload_time": "2019-05-14T20:55:42", "url": "https://files.pythonhosted.org/packages/18/11/50bd49539f88e4eadf60a309565f1d19cbfd780cec855beaf4fc57984cc6/cuttlery-0.1613.tar.gz" } ], "0.1614": [ { "comment_text": "", "digests": { "md5": "a76ade0f82af4057769af80402e64e67", "sha256": "f36625685aaf9fcb3522ace3f56c662d003d9c3989bbe3f158f0c485a0c5dda6" }, "downloads": -1, "filename": "cuttlery-0.1614-py3-none-any.whl", "has_sig": false, "md5_digest": "a76ade0f82af4057769af80402e64e67", "packagetype": "bdist_wheel", "python_version": "py3", "requires_python": null, "size": 54238, "upload_time": "2019-05-14T21:00:19", "url": "https://files.pythonhosted.org/packages/b1/b8/736127254e7bf816594506982d9b154dcbee9d98dd892eeacefb10522235/cuttlery-0.1614-py3-none-any.whl" }, { "comment_text": "", "digests": { "md5": "94bb2d33016754c20565f5ce40d62728", "sha256": "c7c0cc3b9eae89378cf11b12fb3ab4de0bece8b0841134cb03d2cd7e0a345c82" }, "downloads": -1, "filename": "cuttlery-0.1614.tar.gz", "has_sig": false, "md5_digest": "94bb2d33016754c20565f5ce40d62728", "packagetype": "sdist", "python_version": "source", "requires_python": null, "size": 46406, "upload_time": "2019-05-14T21:00:20", "url": "https://files.pythonhosted.org/packages/d0/3a/036ad2085e3f398c35a8a7fac8adc67503b6d78c23b4f150374ec9da7b4c/cuttlery-0.1614.tar.gz" } ] }, "urls": [ { "comment_text": "", "digests": { "md5": "a76ade0f82af4057769af80402e64e67", "sha256": "f36625685aaf9fcb3522ace3f56c662d003d9c3989bbe3f158f0c485a0c5dda6" }, "downloads": -1, "filename": "cuttlery-0.1614-py3-none-any.whl", "has_sig": false, "md5_digest": "a76ade0f82af4057769af80402e64e67", "packagetype": "bdist_wheel", "python_version": "py3", "requires_python": null, "size": 54238, "upload_time": "2019-05-14T21:00:19", "url": "https://files.pythonhosted.org/packages/b1/b8/736127254e7bf816594506982d9b154dcbee9d98dd892eeacefb10522235/cuttlery-0.1614-py3-none-any.whl" }, { "comment_text": "", "digests": { "md5": "94bb2d33016754c20565f5ce40d62728", "sha256": "c7c0cc3b9eae89378cf11b12fb3ab4de0bece8b0841134cb03d2cd7e0a345c82" }, "downloads": -1, "filename": "cuttlery-0.1614.tar.gz", "has_sig": false, "md5_digest": "94bb2d33016754c20565f5ce40d62728", "packagetype": "sdist", "python_version": "source", "requires_python": null, "size": 46406, "upload_time": "2019-05-14T21:00:20", "url": "https://files.pythonhosted.org/packages/d0/3a/036ad2085e3f398c35a8a7fac8adc67503b6d78c23b4f150374ec9da7b4c/cuttlery-0.1614.tar.gz" } ] }