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"author": "John Chase",
"author_email": "chasejohnh@gmail.com",
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"Development Status :: 4 - Beta",
"Intended Audience :: Science/Research",
"License :: OSI Approved :: BSD License",
"Operating System :: MacOS :: MacOS X",
"Operating System :: Microsoft :: Windows",
"Operating System :: POSIX",
"Operating System :: Unix",
"Programming Language :: Python :: 3",
"Programming Language :: Python :: 3.3",
"Programming Language :: Python :: 3.4",
"Topic :: Scientific/Engineering",
"Topic :: Utilities"
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"description": "=======\ncual-id\n=======\n|Build Status| |Coverage Status|\n\ncual-id paper\n=============\nPreprint outlining implications and uses of cual-id.\n`cual-id globally unique, correctable, and human-friendly sample identifiers for comparative\n-omics studies `__.\n\nPeer review is currently in progress\n\n\nInstall\n=======\n\n.. code:: bash\n\n pip install cual-id\n\n\nUsage\n=====\n\nGetting help\n------------\n\n.. code:: bash\n\n cual-id --help\n\n\nCreating a list of IDs\n----------------------\n\n.. code:: bash\n\n cual-id create ids 42 # writes 42 ids to stdout\n cual-id create ids 42 > my-ids.txt # writes 42 ids to my-ids.txt\n\n\n\nCreating a PDF of ID labels\n---------------------------\n\nIf you need to label sample containers with stickers, you can create a\nprintable PDF for those stickers. Currently the only sticker sheet format\nsupported is a 4 by 9 sheet. We designed this printout for\n`Electronic Imaging Materials #80402 label sheets\n`_. When printing PDFs make\nsure to check `Actual Size` in the print dialog box.\n\n.. code:: bash\n\n cual-id create labels my-ids.txt --output-pdf my-labels.pdf\n cual-id create labels my-ids.txt --output-pdf my-labels.pdf --suppress-ids # don't print the ids, only the barcodes\n cual-id create labels my-ids.txt --output-pdf my-labels.pdf --barcode none # don't print barcodes, just the ids\n\n\nCorrecting a list of ids\n------------------------\n\n.. code:: bash\n\n cual-id fix examples/modified-ids.txt --correct-ids examples/ids.txt # report fixed, unfixable and duplicates, the default\n cual-id fix examples/modified-ids.txt --correct-ids examples/ids.txt --show FN # report only fixed and unfixable IDs\n\nResult code definitions\n~~~~~~~~~~~~~~~~~~~~~~~\n* D: duplicate\n* F: fixed\n* N: not fixable\n* V: valid (didn't need correction)\n\nOutput Format\n~~~~~~~~~~~~~\n\n::\n\n input-id output-id result-codes\n\n\nFor example:\n\n::\n\n 1a529f8b\t1a529f88\tF\n d60d0e2b\td60d0c2b\tF\n 439628o9\t43962809\tF\n 439628o9\t43962809\tDF\n df47deb4\tdf47deba\tF\n\n\nPython API\n----------\n\n.. code:: python\n\n from cualid import create_ids\n create_ids(10) # Creates a list of tuples containing a UUID and a cualid\n\n\n.. |Build Status| image:: https://travis-ci.org/johnchase/cual-id.svg?branch=master\n :target: https://travis-ci.org/johnchase/cual-id\n.. |Coverage Status| image:: https://coveralls.io/repos/johnchase/cual-id/badge.svg?branch=master&service=github\n :target: https://coveralls.io/github/johnchase/cual-id?branch=master",
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