{ "info": { "author": "Max Harlow", "author_email": "maxharlow@gmail.com", "bugtrack_url": null, "classifiers": [ "Development Status :: 5 - Production/Stable", "Environment :: Console", "Intended Audience :: Developers", "Intended Audience :: End Users/Desktop", "Intended Audience :: Science/Research", "License :: OSI Approved :: Apache Software License", "Natural Language :: English", "Operating System :: OS Independent", "Programming Language :: Python :: 3.7", "Topic :: Scientific/Engineering :: Information Analysis", "Topic :: Utilities" ], "description": "CSV Match\n=========\n\nFind (fuzzy) matches between two CSV files in the terminal.\n\n[There's a tutorial on how CSV Match can be used for investigative journalism here.](https://github.com/maxharlow/tutorials/tree/master/find-connections-with-fuzzy-matching)\n\n\nInstalling\n----------\n\n pip install csvmatch\n\nGet an error saying 'command not found'? Sometimes `pip` has a different name -- try typing `pip3` instead. If you get an error saying 'permission denied', try prepending `sudo`.\n\nUsage\n-----\n\nSay you have one CSV file such as:\n\n name,location,codename\n George Smiley,London,Beggerman\n Percy Alleline,London,Tinker\n Roy Bland,London,Soldier\n Toby Esterhase,Vienna,Poorman\n Peter Guillam,Brixton,none\n Bill Haydon,London,Tailor\n Oliver Lacon,London,none\n Jim Prideaux,Slovakia,none\n Connie Sachs,Oxford,none\n\nAnd another such as:\n\n Person Name,Location\n Maria Andreyevna Ostrakova,Russia\n Otto Leipzig,Estonia\n George SMILEY,London\n Peter Guillam,Brixton\n Konny Saks,Oxford\n Saul Enderby,London\n Sam Collins,Vietnam\n Tony Esterhase,Vienna\n Claus Kretzschmar,Hamburg\n\nYou can then find which names are in both files:\n\n $ csvmatch data1.csv data2.csv \\\n --fields1 name \\\n --fields2 'Person Name'\n\nYou can also compare multiple columns, so if we wanted to find which name and location combinations are in both files we could:\n\n $ csvmatch data1.csv data2.csv \\\n --fields1 name location \\\n --fields2 'Person Name' Location\n\nBy default, all columns are used to compare rows. Specific columns can be also be given to be compared -- these should be in the same order for both files. Column headers with a space should be enclosed in quotes. Matches are case-sensitive by default, but case can be ignored with `-i`.\n\nOther things can also be ignored. We can ignore non-alphanumeric characters (`-a`), characters from non-latin alphabets (`-n`), the order words are given in (`-s`), and the order letters are given in (`-e`), and common English name prefixes such as Mr and Ms (`-t`). Terms specific to your data can be ignored by passing a text file containing a regular expression on each line (`-l`).\n\nBy default the columns used in the output are the same ones used for matching. Other sets of columns can be specified using the `--output` parameter. This takes a space-separated list of column names, each prefixed with a number and a dot indicating which file that field is from:\n\n $ csvmatch data1.csv data2.csv \\\n --fields1 name location \\\n --fields2 'Person Name' Location \\\n --output 1.name '2.Person Name' 2.Location \\\n > results.csv\n\nThere are also some special column definitions. `1*` and `2*` expand into all columns from that file. Where a fuzzy matching algorithm has been used `degree` will add a column with a number between 0 - 1 indicating the strength of each match.\n\nBy default the two files are linked using an inner join -- only successful matches are returned. However using `-f` you can specify a `left-outer` join which will return everything from the first file, whether there was a match or not. You can also specify `right-outer` to do the same but for the second file, and `full-outer` to return everything from both files.\n\nWe can combine some of the above options to perform operations alike Excel's `VLOOKUP`. So if we wanted to add a column to `data2.csv` giving the codename of each person that is specified in `data1.csv`:\n\n $ csvmatch data1.csv data2.csv \\\n --fields1 name \\\n --fields2 'Person Name' \\\n --join right-outer \\\n --output 2* 1.codename \\\n > results.csv\n\n### Fuzzy matching\n\nCSV Match also supports fuzzy matching. This can be combined with any of the above options.\n\n#### Bilenko\n\nThe default fuzzy mode makes use of the [Dedupe library](https://github.com/dedupeio/dedupe) built by Forest Gregg and Derek Eder based on the work of Mikhail Bilenko. This algorithm asks you to give a number of examples of records from each dataset that are the same -- this information is extrapolated to link the rest of the dataset.\n\n $ csvmatch data1.csv data2.csv --fuzzy\n\nThe more examples you give it, the better the results will be. At minimum, you should try to provide 10 positive matches and 10 negative matches.\n\n#### Levenshtein\n\n[Damerau-Levenshtein](https://en.wikipedia.org/wiki/Damerau\u2013Levenshtein_distance) is a string distance metric which counts the number of changes that would have to be made to transform one string into another.\n\nFor two strings to be considered a match, we require 60% of the longer string to be the same as the shorter one. This threshold can be modified by passing a number between 0.0 and 1.0 with `-r`.\n\n $ csvmatch data1.csv data2.csv --fuzzy levenshtein\n\n name,Person Name\n George Smiley,George SMILEY\n Toby Esterhase,Tony Esterhase\n Peter Guillam,Peter Guillam\n\nHere this matches Toby Esterhase and Tony Esterhase -- Levenshtein is good at picking up typos and other small differences in spelling.\n\n### Jaro\n\n[Jaro-Winkler](https://en.wikipedia.org/wiki/Jaro\u2013Winkler_distance) is a string distance metric which counts the number of transpositions that would be required to transform one string into another. It tends to work better than Levenshtein for shorter strings of text.\n\n $ csvmatch data1.csv data2.csv --fuzzy jaro\n\n name,Person Name\n George Smiley,George SMILEY\n Percy All\u00e9line,Peter Guillam\n Percy All\u00e9line,Sam Collins\n Toby Esterhase,Tony Esterhase\n Peter Gu\u00edllam,Peter Guillam\n Connie Sachs,Konny Saks\n\nHere we can see a couple of incorrect matches for Percy All\u00e9line, but Connie Sachs has matched.\n\n#### Metaphone\n\n[Double Metaphone](https://en.wikipedia.org/wiki/Metaphone#Double_Metaphone) is a phonetic matching algorithm, which compares strings based on how they are pronounced:\n\n $ csvmatch data1.csv data2.csv --fuzzy metaphone\n\n name,Person Name\n George Smiley,George SMILEY\n Peter Guillam,Peter Guillam\n Connie Sachs,Konny Saks\n\nThis shows a match for Connie Sachs and Konny Saks, despite their very different spellings.\n\n\nCommon installation problems\n----------------------------\n\n### `No module named 'numpy'`\n\nIf you're on a Mac, this could mean you need to install the Xcode command line developer tools. These can be installed by:\n\n $ xcode-select --install\n\nThen click install on the prompt that appears. After it's finished, try installing CSV Match again.\n\n### `Broken toolchain: cannot link a simple C program`\n\nIf you're on a Mac, this could mean you need to accept the Xcode licence. To do this:\n\n $ sudo xcodebuild -license accept\n\nYou'll be asked for your password. After it's finished, try installing CSV Match again.\n\n\nA note on uniqueness\n--------------------\n\nBoth with exact matches and fuzzy matching a name being the same is [no guarantee](https://en.wikipedia.org/wiki/List_of_most_popular_given_names) it refers to the same person. But the inverse is also true -- even with CSV Match, a combination of first inital and last name is likely to be sufficiently different from forename, middle names, and surname together that a match is unlikely. 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