{ "info": { "author": "Daniel Domingo Fern\u00e1ndez", "author_email": "daniel.domingo.fernandez@scai.fraunhofer.de", "bugtrack_url": null, "classifiers": [ "Development Status :: 4 - Beta", "Environment :: Console", "Intended Audience :: Developers", "Intended Audience :: Science/Research", "License :: OSI Approved :: MIT License", "Operating System :: OS Independent", "Programming Language :: Python", "Programming Language :: Python :: 3.4", "Programming Language :: Python :: 3.5", "Programming Language :: Python :: 3.6", "Topic :: Scientific/Engineering :: Bio-Informatics" ], "description": "ComPath HGNC |build| |coverage| |documentation|\n===============================================\nThis package support the mapping across different protein/gene identifiers.\n\nCitation\n--------\nGray KA, Yates B, Seal RL, Wright MW, Bruford EA. genenames.org: the HGNC resources in 2015. Nucleic Acids Res. 2015\nJan;43(Database issue):D1079-85. doi: 10.1093/nar/gku1071. http://www.ncbi.nlm.nih.gov/pubmed/25361968\n\nInstallation |pypi_version| |python_versions| |pypi_license|\n------------------------------------------------------------\n``compath_hgnc`` can be installed easily from `PyPI `_ with the\nfollowing code in your favorite terminal:\n\n.. code-block:: sh\n\n $ python3 -m pip install compath_hgnc\n\nor from the latest code on `GitHub `_ with:\n\n.. code-block:: sh\n\n $ python3 -m pip install git+https://github.com/compath/compath_hgnc.git@master\n\nSetup\n-----\nHGNC can be downloaded and populated from either the Python REPL or the automatically installed command line\nutility.\n\nPython REPL\n~~~~~~~~~~~\n.. code-block:: python\n\n >>> import compath_hgnc\n >>> compath_hgnc_manager = compath_hgnc.Manager()\n >>> compath_hgnc_manager.populate()\n\nCommand Line Utility\n~~~~~~~~~~~~~~~~~~~~\n.. code-block:: bash\n\n compath_hgnc populate\n\nAcknowledgements\n----------------\n- This package heavily relies on Andrej Konotopez's package `PyHGNC `_ and the\n `Bio2BEL HGNC `_.\n\n.. |build| image:: https://travis-ci.org/compath/compath_hgnc.svg?branch=master\n :target: https://travis-ci.org/compath/compath_hgnc\n :alt: Build Status\n\n.. |coverage| image:: https://codecov.io/gh/compath/compath_hgnc/coverage.svg?branch=master\n :target: https://codecov.io/gh/compath/compath_hgnc?branch=master\n :alt: Coverage Status\n\n.. |documentation| image:: http://readthedocs.org/projects/compath_hgnc/badge/?version=latest\n :target: http://bio2bel.readthedocs.io/projects/compath_hgnc/en/latest/?badge=latest\n :alt: Documentation Status\n\n.. |climate| image:: https://codeclimate.com/github/compath/compath_hgnc/badges/gpa.svg\n :target: https://codeclimate.com/github/compath/compath_hgnc\n :alt: Code Climate\n\n.. |python_versions| image:: https://img.shields.io/pypi/pyversions/compath_hgnc.svg\n :alt: Stable Supported Python Versions\n\n.. |pypi_version| image:: https://img.shields.io/pypi/v/compath_hgnc.svg\n :alt: Current version on PyPI\n\n.. |pypi_license| image:: https://img.shields.io/pypi/l/compath_hgnc.svg\n :alt: MIT License", "description_content_type": "", "docs_url": null, "download_url": "", "downloads": { "last_day": -1, "last_month": -1, "last_week": -1 }, "home_page": "https://github.com/ComPath/compath_hgnc", "keywords": "Pathways,Systems Biology,Networks Biology", "license": "MIT License", "maintainer": "Daniel Domingo Fern\u00e1ndez", "maintainer_email": "daniel.domingo.fernandez@scai.fraunhofer.de", "name": "compath-hgnc", "package_url": "https://pypi.org/project/compath-hgnc/", "platform": "", "project_url": "https://pypi.org/project/compath-hgnc/", "project_urls": { "Homepage": "https://github.com/ComPath/compath_hgnc" }, "release_url": "https://pypi.org/project/compath-hgnc/0.0.2/", "requires_dist": null, "requires_python": "", "summary": "A package that wraps PyHGNC to perform mappings between different gene identifiers", "version": "0.0.2" }, "last_serial": 3931510, "releases": { "0.0.1": [ { "comment_text": "", "digests": { "md5": "700164080be26999ea182e21d7ae05cd", "sha256": "ca868a7fdd772d7876b67c750bf48edc06c948cc90ddd0a58dcb69a20865f77e" }, "downloads": -1, "filename": "compath_hgnc-0.0.1-py3-none-any.whl", "has_sig": false, "md5_digest": "700164080be26999ea182e21d7ae05cd", "packagetype": "bdist_wheel", "python_version": "py3", "requires_python": null, "size": 4964, "upload_time": "2018-05-07T18:45:59", "url": "https://files.pythonhosted.org/packages/b6/66/3efc438184d60808c806372e8fe753042e197402d93c771defd5867cf974/compath_hgnc-0.0.1-py3-none-any.whl" }, { "comment_text": "", "digests": { "md5": "ec7aca6acc32913074c7a16eea6e1286", "sha256": "be66249630efffa9514ae6b68863b1f09da6a036736fe5b401e201d95856ce58" }, "downloads": -1, "filename": "compath_hgnc-0.0.1.tar.gz", "has_sig": false, "md5_digest": "ec7aca6acc32913074c7a16eea6e1286", "packagetype": "sdist", "python_version": "source", "requires_python": null, "size": 4535, "upload_time": "2018-05-07T18:46:01", "url": "https://files.pythonhosted.org/packages/f9/b7/ca2308ffbadc8cefad611e9658be3571f103f522fc4ee02fe8aea89ad128/compath_hgnc-0.0.1.tar.gz" } ], "0.0.2": [ { "comment_text": "", "digests": { "md5": "00c3c9e4acbc16c874e5af0a16677c33", "sha256": "54e4d88d331edd564137bb561d92d0754d91eb60734e1832a39e398e5fdf11ed" }, "downloads": -1, "filename": "compath_hgnc-0.0.2.tar.gz", "has_sig": false, "md5_digest": "00c3c9e4acbc16c874e5af0a16677c33", "packagetype": "sdist", "python_version": "source", "requires_python": null, "size": 4704, "upload_time": "2018-06-05T09:45:34", "url": "https://files.pythonhosted.org/packages/6c/cf/66100f103aa8ae7a2faecf11bccdacb049bf6c9fceae20fade1a9db06cc1/compath_hgnc-0.0.2.tar.gz" } ] }, "urls": [ { "comment_text": "", "digests": { "md5": "00c3c9e4acbc16c874e5af0a16677c33", "sha256": "54e4d88d331edd564137bb561d92d0754d91eb60734e1832a39e398e5fdf11ed" }, "downloads": -1, "filename": "compath_hgnc-0.0.2.tar.gz", "has_sig": false, "md5_digest": "00c3c9e4acbc16c874e5af0a16677c33", "packagetype": "sdist", "python_version": "source", "requires_python": null, "size": 4704, "upload_time": "2018-06-05T09:45:34", "url": "https://files.pythonhosted.org/packages/6c/cf/66100f103aa8ae7a2faecf11bccdacb049bf6c9fceae20fade1a9db06cc1/compath_hgnc-0.0.2.tar.gz" } ] }