{ "info": { "author": "Clayton Cafiero", "author_email": "clayton.cafiero@uvm.edu", "bugtrack_url": null, "classifiers": [ "License :: OSI Approved :: GNU General Public License v3 or later (GPLv3+)", "Operating System :: OS Independent", "Programming Language :: Python :: 3" ], "description": "# COBRA Tools\n\nAn assortment of tools used by COBRA Lab for bioinformatics.\n\n## Getting Started\n\nThese instructions will get you a copy of the project up and running on your local machine for development and testing purposes.\n\n### Prerequisites\n\nRequires Python 3.6 or later. All other requirements are included in `requirements.txt`\n\n### Installing\n\nA step by step series of examples that tell you how to get a development env running\n\nSay what the step will be\n\n```\nGive the example\n```\n\nAnd repeat\n\n```\nuntil finished\n```\n\nEnd with an example of getting some data out of the system or using it for a little demo\n\n### Unit testing\n\nRun unit tests with \n\n cd general\n pytest -sv --cov-report term-missing --cov=models\n\n### Linting\n\nLint with\n\n cd general\n pylint *.py models tests\n\nNote that pylint treats all module-level variables as constants.\n\nAlso\n\n cd general\n flake8\n\n### Type Checking\n\nRun static type checking (from project root) with\n\n mypy general/*.py general/tests general/models\n\n## Contributing\n\nPlease read SOMETHING HERE for details and process for submitting pull requests to us.\n\n## Versioning\n\nSomething about versioning here\n\n## Authors\n\n* **Clayton Cafiero** - *Initial work*\n\nSee also the list of [contributors](https://github.com/cbcafiero/cobra/contributors) who participated in this project.\n\n## License\n\nThis project is licensed under the GPLv3 license - 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