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        "author": "Christoph Gohlke",
        "author_email": "cgohlke@uci.edu",
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            "License :: OSI Approved :: BSD License",
            "Operating System :: OS Independent",
            "Programming Language :: Python :: 2",
            "Programming Language :: Python :: 2.7",
            "Programming Language :: Python :: 3",
            "Programming Language :: Python :: 3.5",
            "Programming Language :: Python :: 3.6",
            "Programming Language :: Python :: 3.7"
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        "description": "Write Chimera Map (CMAP) files\n==============================\n\nCmapfile is a Python library and console script to write Chimera Map (CMAP)\nfiles, HDF5 files containing series of 3D XYZ datasets.\n\nCMAP files can be created from numpy arrays and various file formats\ncontaining volume data, e.g. BIN, TIFF, LSM, OIF, and OIB.\n\nCMAP files can be visualized using UCSF Chimera [2], a highly extensible\nprogram for interactive visualization and analysis of molecular structures\nand related data.\n\nFor command line usage run ``python -m cmapfile --help``\n\n:Author:\n  `Christoph Gohlke <https://www.lfd.uci.edu/~gohlke/>`_\n\n:Organization:\n  Laboratory for Fluorescence Dynamics. University of California, Irvine\n\n:Version: 2019.1.1\n\nRequirements\n------------\n* `CPython 2.7 or 3.5+ <https://www.python.org>`_\n* `Numpy 1.13 <https://www.numpy.org>`_\n* `Scipy 1.0 <https://www.scipy.org>`_\n* `H5py 2.8 <https://www.h5py.org/>`_\n* `Tifffile 2019.1.1 <https://pypi.org/project/tifffile/>`_\n* `Oiffile 2019.1.1 <https://pypi.org/project/oiffile/>`_\n\nReferences\n----------\n(1) Thomas Goddard. [Chimera-users] reading in hdf5 files in chimera.\n    https://www.cgl.ucsf.edu/pipermail/chimera-users/2008-September/003052.html\n(2) UCSF Chimera, an extensible molecular modeling system.\n    https://www.cgl.ucsf.edu/chimera/\n(3) Globals for Images - SimFCS. https://www.lfd.uci.edu/globals/\n\nExamples\n--------\nConvert a 5D LSM file to CMAP file::\n\n    python -m cmapfile \"/my data directory/large.lsm\"\n\nConvert all BIN files in the current directory to test.cmap. The BIN files\nare known to contain 128x128x64 samples of 16 bit integers. The CMAP file\nwill store float32 maps using subsampling up to 16::\n\n    python -m cmapfile --shape 128,128,64 --step 1,1,2 --dtype i2\n                       --cmap test.cmap --subsample 16 --astype float32 *.bin\n\nChange the step size in the CMAP file::\n\n    python -m cmapfile --step 1,1,1.5 test.cmap\n\nNotes\n-----\nThe CMAP file format according to [1]::\n\n    Example of HDF format written by Chimera (Chimera map format) follows.\n    The Chimera map file reader will allow all fields to be missing (except\n    the 3D data).\n\n    /image (group, any name allowed)\n     name \"centriole\" (attribute)\n     step (1.2, 1.2, 1.2) (attribute)\n     origin (-123.4, -522, 34.5) (attribute)\n     cell_angles (90.0, 90.0, 90.0) (attribute)\n     rotation_axis (0.0, 0.0, 1.0) (attribute)\n     rotation_angle 45.0 (attribute, degrees)\n     /data (3d array of uint8 (123,542,82)) (dataset, any name allowed)\n     /data_x (3d array of uint8 (123,542,82), alternate chunk shape) (dataset)\n     /data_2 (3d array of uint8 (61,271,41)) (dataset, any name allowed)\n        subsample_spacing (2, 2, 2) (attribute)\n     (more subsampled or alternate chunkshape versions of same data)\n\n\nRevisions\n---------\n2019.1.1\n    Update copyright.\n2018.8.30\n    Move cmapfile.py into cmapfile package.\n2014.10.10\n    Initial release.\n\n\n",
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