{ "info": { "author": "Joshua Ma", "author_email": "josh@benchling.com", "bugtrack_url": null, "classifiers": [], "description": "clustalo-python\n===============\n\nThis is just a simple Python wrapper around Clustal Omega\n(http://www.clustal.org/omega/), used internally at Benchling but casually open\nsource, if it helps anybody. Also available via::\n\n pip install clustalo\n\nRequires `libclustalo` installed, version 1.2.0. On Linux, it's recommended you\nbuild and install it yourself::\n\n cd clustal-omega-1.2.0\n ./configure --with-pic --with-openmp\n make && sudo make install\n\nbefore installing this package.\n\nSupport for OSX is not quite there yet, mainly because OpenMP isn't supported\non clang. Homebrew is still on 1.1.0, so you'll need to compile and install\nclustalo 1.2.0 yourself (`--without-openmp`). You'll also need to modify the\nsetup.py file to leave out `gomp` and `-fopenmp` when installing.\n\nUsage\n-----\n::\n\n from clustalo import clustalo\n input = {\n 'seq1': 'AAATCGGAAA',\n 'seq2': 'CGGA'\n }\n aligned = clustalo(input)\n # aligned is a dict of aligned sequences:\n # seq1: AAATCGGAAA\n # seq2: ----CGGA--\n\nAt the moment, input sequences are assumed to not be aligned (i.e. there is no\ndealign option). See ``clustalo.clustalo.__doc__`` or file ``clustaslo/clustalo.c``\nfor documentation.\n\n", "description_content_type": null, "docs_url": null, "download_url": "UNKNOWN", "downloads": { "last_day": -1, "last_month": -1, "last_week": -1 }, "home_page": "https://github.com/benchling/clustalo-python", "keywords": null, "license": "UNKNOWN", "maintainer": null, "maintainer_email": null, "name": "clustalo", "package_url": "https://pypi.org/project/clustalo/", "platform": "UNKNOWN", "project_url": "https://pypi.org/project/clustalo/", "project_urls": { "Download": "UNKNOWN", "Homepage": "https://github.com/benchling/clustalo-python" }, "release_url": "https://pypi.org/project/clustalo/0.1.1/", "requires_dist": null, "requires_python": null, "summary": "Python wrapper around libclustalo", "version": "0.1.1" }, "last_serial": 1167403, "releases": { "0.1": [ { "comment_text": "built for Darwin-13.3.0", "digests": { "md5": "f2c3ef94fdd597fdb8ac97178d221fe3", "sha256": "0e76e1de98a820c21d954d302e6a53d30b5e417d2a182b230044662d1f7f749f" }, "downloads": -1, "filename": "clustalo-0.1.macosx-10.9-x86_64.tar.gz", "has_sig": false, "md5_digest": "f2c3ef94fdd597fdb8ac97178d221fe3", "packagetype": "bdist_dumb", "python_version": "2.7", "requires_python": null, "size": 260015, "upload_time": "2014-07-23T23:13:25", "url": "https://files.pythonhosted.org/packages/e4/ec/57f58e09521cd16cf676c99dc959c4d0d58ed38e966b6dd743a9499cdbf2/clustalo-0.1.macosx-10.9-x86_64.tar.gz" }, { "comment_text": "", "digests": { "md5": "ba4f3d841e58fed11e6afa00dcbb0252", "sha256": "24ace8f7a8eeefca8141fb92c513924e8138207d2d5226e287c4d94b38a27716" }, "downloads": -1, "filename": "clustalo-0.1.tar.gz", "has_sig": false, "md5_digest": "ba4f3d841e58fed11e6afa00dcbb0252", "packagetype": "sdist", "python_version": "source", "requires_python": null, "size": 2933, "upload_time": "2013-12-14T00:04:18", "url": "https://files.pythonhosted.org/packages/ef/32/5414c43fb3d011a28ee337f7bf201c8fe8b01b2605af7bf9fe6ff32fa84d/clustalo-0.1.tar.gz" } ], "0.1.1": [ { "comment_text": "built for Darwin-13.3.0", "digests": { "md5": "ba07db367e765af57ffd1bea049e83ce", "sha256": "87dc8d80e2e090429f30b096fe0af187a227c26206734b0e39eea2fbf84fc217" }, "downloads": -1, "filename": "clustalo-0.1.1.macosx-10.9-x86_64.tar.gz", "has_sig": false, "md5_digest": "ba07db367e765af57ffd1bea049e83ce", "packagetype": "bdist_dumb", "python_version": "2.7", "requires_python": null, "size": 260018, "upload_time": "2014-07-23T23:14:01", "url": "https://files.pythonhosted.org/packages/33/5b/491d3340dece281bd6d62f617e12a688fee7d26ab45a48de9909cec18b08/clustalo-0.1.1.macosx-10.9-x86_64.tar.gz" }, { "comment_text": "", "digests": { "md5": "5779651ea85dd278d8afef89b4a88005", "sha256": "f67429881c29c7bcb52e0cc6269c82a2e30d1d03e33d0fad843d94380e17c517" }, "downloads": -1, "filename": "clustalo-0.1.1.tar.gz", "has_sig": false, "md5_digest": "5779651ea85dd278d8afef89b4a88005", "packagetype": "sdist", "python_version": "source", "requires_python": null, "size": 3049, "upload_time": "2014-07-23T23:13:56", "url": "https://files.pythonhosted.org/packages/88/f6/05689339186b64b7e7671ceac15c73a6e3846f4749077f8eeb29d3df09ff/clustalo-0.1.1.tar.gz" } ] }, "urls": [ { "comment_text": "built for Darwin-13.3.0", "digests": { "md5": "ba07db367e765af57ffd1bea049e83ce", "sha256": "87dc8d80e2e090429f30b096fe0af187a227c26206734b0e39eea2fbf84fc217" }, "downloads": -1, "filename": "clustalo-0.1.1.macosx-10.9-x86_64.tar.gz", "has_sig": false, "md5_digest": "ba07db367e765af57ffd1bea049e83ce", "packagetype": "bdist_dumb", "python_version": "2.7", "requires_python": null, "size": 260018, "upload_time": "2014-07-23T23:14:01", "url": "https://files.pythonhosted.org/packages/33/5b/491d3340dece281bd6d62f617e12a688fee7d26ab45a48de9909cec18b08/clustalo-0.1.1.macosx-10.9-x86_64.tar.gz" }, { "comment_text": "", "digests": { "md5": "5779651ea85dd278d8afef89b4a88005", "sha256": "f67429881c29c7bcb52e0cc6269c82a2e30d1d03e33d0fad843d94380e17c517" }, "downloads": -1, "filename": "clustalo-0.1.1.tar.gz", "has_sig": false, "md5_digest": "5779651ea85dd278d8afef89b4a88005", "packagetype": "sdist", "python_version": "source", "requires_python": null, "size": 3049, "upload_time": "2014-07-23T23:13:56", "url": "https://files.pythonhosted.org/packages/88/f6/05689339186b64b7e7671ceac15c73a6e3846f4749077f8eeb29d3df09ff/clustalo-0.1.1.tar.gz" } ] }