{
    "info": {
        "author": "Guanliang Meng",
        "author_email": "mengguanliang@foxmail.com",
        "bugtrack_url": null,
        "classifiers": [
            "Development Status :: 3 - Alpha",
            "Intended Audience :: Science/Research",
            "License :: OSI Approved :: GNU General Public License v3 or later (GPLv3+)",
            "Operating System :: MacOS :: MacOS X",
            "Operating System :: Microsoft :: Windows",
            "Operating System :: POSIX :: Linux",
            "Programming Language :: Python :: 3",
            "Topic :: Scientific/Engineering :: Bio-Informatics"
        ],
        "description": "# cigar_coordinates\n\n## 1 Introduction\n\n`cigar_coordinates` is a tool To get the coordinates of a given CIGAR string. CIGARs are in respect of the reference sequence. By Guanliang MENG, see https://github.com/linzhi2013/cigar_coordinates. \n\n`cigar_coordinates` understands the following CIGAR characters:\n\n       seq - - - N N N O O O\n    refseq - N O N - O O N -\n     cigar P n D B u U M N I\n\n\n## 2 Installation\n\n    pip install cigar_coordinates\n\nThere will be a command `cigar_coordinates` created under the same directory as your `pip` command.\n\n## 3 Usage\n    \n    $ cigar_coordinates\n    usage: cigar_coordinates [-h] -c <STR> [-s <INT>] [-q] [-d {+,-}]\n\n    To get the coordinates of a given CIGAR string.\n    By Guanliang MENG, see https://github.com/linzhi2013/cigar_coordinates.\n\n    I understand the following CIGAR types:\n\n         seq - - - N N N O O O\n      refseq - N O N - O O N -\n       cigar P n D B u U M N I\n\n    The output coordinates are closed intervals.\n\n    optional arguments:\n      -h, --help  show this help message and exit\n      -c <STR>    input CIGAR string\n      -s <INT>    the start coordinate on the sequence, whatever the gene\n                  direction is, this option is always the smaller one. [1]\n      -q          the '-s' option is about query sequence, not refseq [True]\n      -d {+,-}    the gene direction [+]\n\n## 4 Example\n  \nFor a gene: ND1;len=945;\\[2444:3389\\]\\(\\+\\)\n\n    $ cigar_coordinates -c 6D166M268N511M -s 2444\n    6D  2444  2444\n    166M  2444  2609\n    268N  2610  2877\n    511M  2878  3388\n\n## 5 Author\nGuanliang MENG\n\n## 6 Citation\nCurrently I have no plan to publish `cigar_coordinates`.",
        "description_content_type": "text/markdown",
        "docs_url": null,
        "download_url": "",
        "downloads": {
            "last_day": -1,
            "last_month": -1,
            "last_week": -1
        },
        "home_page": "https://github.com/linzhi2013/cigar_coordinates",
        "keywords": "",
        "license": "",
        "maintainer": "",
        "maintainer_email": "",
        "name": "cigar-coordinates",
        "package_url": "https://pypi.org/project/cigar-coordinates/",
        "platform": "",
        "project_url": "https://pypi.org/project/cigar-coordinates/",
        "project_urls": {
            "Homepage": "https://github.com/linzhi2013/cigar_coordinates"
        },
        "release_url": "https://pypi.org/project/cigar-coordinates/0.0.1/",
        "requires_dist": null,
        "requires_python": ">=3",
        "summary": "To get the coordinates of a given CIGAR string. By Guanliang MENG, see https://github.com/linzhi2013/cigar_coordinates.",
        "version": "0.0.1"
    },
    "last_serial": 4164154,
    "releases": {
        "0.0.1": [
            {
                "comment_text": "",
                "digests": {
                    "md5": "6b989ef4dfdf2d0def00f94fbddab35c",
                    "sha256": "21c43fa4266cd685c7f258bdffc8ec75984a734192d3d83a1a09bf8d4406d176"
                },
                "downloads": -1,
                "filename": "cigar_coordinates-0.0.1.tar.gz",
                "has_sig": false,
                "md5_digest": "6b989ef4dfdf2d0def00f94fbddab35c",
                "packagetype": "sdist",
                "python_version": "source",
                "requires_python": ">=3",
                "size": 17243,
                "upload_time": "2018-08-13T09:20:13",
                "url": "https://files.pythonhosted.org/packages/9e/cd/89c1d7abcc88dd360f4362ede26cea7a16e1f62e175d1be18880b2461af1/cigar_coordinates-0.0.1.tar.gz"
            }
        ]
    },
    "urls": [
        {
            "comment_text": "",
            "digests": {
                "md5": "6b989ef4dfdf2d0def00f94fbddab35c",
                "sha256": "21c43fa4266cd685c7f258bdffc8ec75984a734192d3d83a1a09bf8d4406d176"
            },
            "downloads": -1,
            "filename": "cigar_coordinates-0.0.1.tar.gz",
            "has_sig": false,
            "md5_digest": "6b989ef4dfdf2d0def00f94fbddab35c",
            "packagetype": "sdist",
            "python_version": "source",
            "requires_python": ">=3",
            "size": 17243,
            "upload_time": "2018-08-13T09:20:13",
            "url": "https://files.pythonhosted.org/packages/9e/cd/89c1d7abcc88dd360f4362ede26cea7a16e1f62e175d1be18880b2461af1/cigar_coordinates-0.0.1.tar.gz"
        }
    ]
}