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    "info": {
        "author": "Christopher Churas",
        "author_email": "churas@ncmir.ucsd.edu",
        "bugtrack_url": null,
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            "Development Status :: 2 - Pre-Alpha",
            "Intended Audience :: Developers",
            "Natural Language :: English",
            "Programming Language :: Python :: 2.7",
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        "description": "===============================\nchmutil\n===============================\n\n\n.. image:: https://img.shields.io/pypi/v/chmutil.svg\n           :target: https://pypi.python.org/pypi/chmutil\n\n.. image:: https://pyup.io/repos/github/crbs/chmutil/shield.svg\n        :target: https://pyup.io/repos/github/crbs/chmutil\n\n.. image:: https://travis-ci.org/CRBS/chmutil.svg?branch=master\n       :target: https://travis-ci.org/CRBS/chmutil\n\n.. image:: https://coveralls.io/repos/github/CRBS/chmutil/badge.svg?branch=master\n   :target: https://coveralls.io/github/CRBS/chmutil?branch=master\n\nUtility package to run `Cascaded Hierarchical Model (CHM) <https://www.sci.utah.edu/software/chm.html>`_ jobs on clusters.\n\n`For more information visit our wiki page <https://github.com/CRBS/chmutil/wiki>`_\n\nTools\n--------\n\n* **createchmjob.py** -- Creates a set of CHM jobs to process a set of images on various compute clusters (Gordon, Comet, & Rocce)\n\n* **checkchmjob.py** -- Checks status of jobs generated by **createchmjob.py** script\n\n* **createchmtrainjob.py** -- Creates a CHM train job, runnable on various compute clusters (Comet & Rocce), which teaches CHM how to segment a desired feature. The output from this job is a trained model that is needed as an input for **createchmjob.py**\n\n* **createchmimage.py** -- Simple image conversion utility\n\n* **createprobmapoverlay.py** -- Overlays semi-transparent colored probability maps over base image\n\n* **mergetiles.py** -- Merges a set of image tiles in a directory into single image\n\n* **chmrunner.py** -- Internal tool that runs a CHM task created by **createchmjob.py**\n\n* **mergetilerunner.py** -- Internal tool that runs Merge task created by **createchmjob.py**\n\nDependencies\n--------------\n\n* `argparse <https://pypi.python.org/pypi/argparse>`_\n\n* `configparser <https://pypi.python.org/pypi/configparser>`_\n\n* `Pillow <https://pypi.python.org/pypi/Pillow>`_\n\n* `CHM singularity image <https://github.com/crbs/chm_singularity>`_ (not required to build this software, but is needed to run the jobs)\n\nCompatibility\n-------------\n\n* Should work on Python 2.7 & 3+ on Linux distributions\n\nInstallation\n------------\n\n::\n\n  pip install chmutil\n\nUsage\n--------\n\n::\n\n  # creates a job assuming images are in ./images and ./trainedmodel has\n  # chm model\n  createchmjob.py ./images ./trainedmodel myrun --cluster rocce\n\nLicense\n-------\n\nSee LICENSE.txt_\n\n\nBugs\n-----\n\nPlease report them `here <https://github.com/CRBS/chmutil/issues>`_\n\n\nCredits\n---------\n\nThis package was created with Cookiecutter_ and the `audreyr/cookiecutter-pypackage`_ project template.\n\n.. _LICENSE.txt: https://github.com/CRBS/chmutil/blob/master/LICENSE.txt\n.. _Cookiecutter: https://github.com/audreyr/cookiecutter\n.. _`audreyr/cookiecutter-pypackage`: https://github.com/audreyr/cookiecutter-pypackage\n\n\n\n=======\nHistory\n=======\n\n0.8.4 (2018-03-20)\n------------------\n\n* Try number two to get comet configuration to load singularity 2.3.2.\n  See issue 76 below.\n\n0.8.3 (2018-03-16)\n------------------\n\n* Added --dontdeletescratch option to createtrainingmrcstack.py to skip\n  deletion of scratchdir. \n  `Issue #78 <https://github.com/CRBS/chmutil/issues/78>`_\n\n* Updated comet configuration to load singularity 2.3.2.\n  `Issue #76 <https://github.com/CRBS/chmutil/issues/76>`_\n\n0.8.2 (2017-07-27)\n------------------\n\n* Fixed typo in history notes which caused pypi not to render project description properly\n\n0.8.1 (2017-07-27)\n------------------\n\n* Fixed bug in createtrainingmrcstack.py which caused program to fail due\n  to incorrect call to get_image_path_list(). \n  `Issue #48 <https://github.com/CRBS/chmutil/issues/48>`_\n\n* Increased required memory for merge tasks on Rocce cluster from 10 to\n  20 gigabytes of ram and added virtual_free constraint to handle\n  gigapixel images.\n  `Issue #49 <https://github.com/CRBS/chmutil/issues/49>`_\n\n0.8.0 (2017-06-23)\n------------------\n\n* Added --gentifs to createchmjob.py to generate tif probability map images\n  `Issue #43 <https://github.com/CRBS/chmutil/issues/43>`_\n\n* Fixed bug in checkchmjob.py --detailed where ram value was incorrect\n  `Issue #44 <https://github.com/CRBS/chmutil/issues/44>`_\n\n* Added information about input images to checkchmjob.py --detailed\n  `Issue #28 <https://github.com/CRBS/chmutil/issues/28>`_\n\n\n0.7.0 (2017-06-09)\n------------------\n\n* Added --gentiles flag to createchmimage.py to generate tiles from\n  image that can be viewed in probability map viewer.\n  `Issue #42 <https://github.com/CRBS/chmutil/issues/42>`_\n\n* Added --rawthreshold flag to createprobmapoverlay.py which \n  lets caller specify exact pixel intensity value instead of\n  percentage as offered with --threshpc.\n  `Issue #41 <https://github.com/CRBS/chmutil/issues/41>`_\n\n* Added virtual_free to requirements for SGE jobs submitted\n  by createchmtrainjob.py to rocce cluster. \n  `Issue #40 <https://github.com/CRBS/chmutil/issues/40>`_\n\n0.6.0 (2017-03-03)\n------------------\n\n* Added --detailed option to checkchmjob.py. \n  `Issue #6 <https://github.com/CRBS/chmutil/issues/6>`_\n\n* Added --addprobmap to createprobmapoverlay.py to enable\n  additional probability maps to be overlayed. \n  `Issue #25 <https://github.com/CRBS/chmutil/issues/25>`_\n\n* Added createchmtrainjob.py script that creates a CHM\n  train job. \n  `Issue #19 <https://github.com/CRBS/chmutil/issues/19>`_\n\n* Fixed incorrect script names in readme.txt generated by\n  createchmjob.py. \n  `Issue #20 <https://github.com/CRBS/chmutil/issues/20>`_\n\n0.5.1 (2017-01-12)\n------------------\n\n* Fixed account not being put into runjobs.gordon and runmerge.gordon.\n  `Issue #11 <https://github.com/CRBS/chmutil/issues/11>`_\n\n* Fixed errors in checking job status examples in readme.txt \n  created by createchmjob.py.\n  `Issue #12 <https://github.com/CRBS/chmutil/issues/12>`_\n\n0.5.0 (2017-01-11)\n------------------\n\n* First release on PyPI.\n\n\n\n",
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