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        "author": "Anthony Aylward, Joshua Chiou",
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        "description": "# chipseqpeaks\n\nA wrapper for MACS2 that abstracts out some things and makes it easier to use.\nThanks due to Joshua Chiou for inspiration and contributions.\n\n> **Warning:** Before using chipseqpeaks, please make sure that one of the\n> environment variables TMPDIR, TEMP, or TMP is set to an appropriate path.\n> This is the only way to ensure MACS2 writes temporary files to the correct\n> location, and failing to do so may cause errors on some systems. (\u0e07 \u2022\u0300_\u2022\u0301)\u0e07\n\n## Installation\n\n```sh\npip3 install chipseqpeaks\n```\n\nor\n\n```sh\npip3 install --user chipseqpeaks\n```\n\n## Example API usage\n```python\nfrom chipseqpeaks import ChIPSeqPeaks\nwith ChIPSeqPeaks(<bytes object or path to BAM file>) as cp:\n    cp.cleans_up = False\n    cp.remove_blacklisted_peaks(<path/to/blacklist.bed>)\n    cp.write(<output prefix>)\n```\n\n## Example command line usage\n\nFor help text, see:\n```sh\nchipseqpeaks-call -h\n```\nFor ChIP-seq:\n```sh\nchipseqpeaks-call --control input.bam chip.bam\n```\n\nFor ATAC-seq:\n```sh\nchipseqpeaks-call --atac-seq atac.bam\n```\n\n\n",
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