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        "author": "Gustavo Arango",
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        "description": "## Chloroplast removal tool\n\nThis is a simple tool that removes all 16s rRNAs-like reads from a paired-end sample. By using Bowtie2 paired end reads are screened against the 16S-rRNAs from the greengenes database and removed from the samples. \n\n### Requirements\nMake sure you have installed the following software (packages):\n    Bowtie2\n<!-- BioPython -->\n\n### Instalation\n\n    pip install chfilter --user\n\n<!-- python setup.py install -->\n<!-- pip install . --upgrade -->\n\n### Usage\n    usage: chfiler remove [-h] --paired-1 PAIRED_1 --paired-2 PAIRED_2 --out-dir OUT_DIR\n\n    optional arguments:\n    -h, --help           show this help message and exit\n    --paired-1 PAIRED_1  paired read 1\n    --paired-2 PAIRED_2  paired read 2\n    --out-dir OUT_DIR    output directory\n\n#### Usage example\n    clremove clear --paired-1 ./test/r1.fq --paired-2 ./test/r2.fq --out-dir ./test/\n\n### output files\nThe files with filtered chloroplast reads are stored as \n    \n    *.no-chl.fastq",
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