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    "info": {
        "author": "Christoph Stahl",
        "author_email": "christoph.stahl@uni-dortmund.de",
        "bugtrack_url": null,
        "classifiers": [
            "Development Status :: 5 - Production/Stable",
            "Environment :: Console",
            "Intended Audience :: Science/Research",
            "License :: OSI Approved :: MIT License",
            "Programming Language :: Python :: 3",
            "Programming Language :: Python :: 3.3",
            "Programming Language :: Python :: 3.4",
            "Programming Language :: Python :: 3.5",
            "Topic :: Scientific/Engineering :: Bio-Informatics",
            "Topic :: Scientific/Engineering :: Medical Science Apps."
        ],
        "description": "Coverage Blind Spots\r\n====================\r\n\r\nThis software lists all positions in given bam files, that have no or only \r\nvery limited coverage and stores the result in a hdf5 file.\r\n\r\nUsage\r\n-----\r\n\r\n::\r\n\r\n    cbs [-h] [--min-cov MIN_COV] files [files ...] output\r\n\r\nIf multiple files are given, a position is designated a blind spot, if no file\r\ncontains a coverage of at least MIN_COV at this position.\r\n\r\nOutput\r\n------\r\n\r\nThe output is a hdf5 file with the following structure. For every chromosome a \r\ngroup is created, that contains a dataset called `missing_cov`. The dataset \r\ncontains rows of tuples of 32bit integer, representing the first blind spot and\r\nthe first position having enough coverage.\r\n\r\nInstall\r\n-------\r\n\r\nThis software requires python3, samtools, hdf5, numpy and h5py. All python \r\ndependencies can be installed by installing cbs via pip::\r\n\r\n    pip install cbs",
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        "keywords": "",
        "license": "MIT",
        "maintainer": "",
        "maintainer_email": "",
        "name": "cbs",
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        "summary": "List coverage blind spots",
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