{
    "info": {
        "author": "Santiago Videla",
        "author_email": "santiago.videla@gmail.com",
        "bugtrack_url": null,
        "classifiers": [
            "Intended Audience :: Healthcare Industry",
            "Intended Audience :: Science/Research",
            "License :: OSI Approved :: GNU General Public License v3 or later (GPLv3+)",
            "Operating System :: OS Independent",
            "Programming Language :: Python :: 2.7",
            "Topic :: Scientific/Engineering :: Artificial Intelligence",
            "Topic :: Scientific/Engineering :: Bio-Informatics"
        ],
        "description": "|Build Status| |Documentation Status| |license|\r\n\r\nReasoning on the response of logical signaling networks\r\n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~\r\n\r\nThe manual identification of logic rules underlying a biological system is often hard, error-prone and time consuming. Further, it has been shown that, if the inherent experimental noise is considered, many different logical networks can be compatible with a set of experimental observations.\r\nThus, automated **inference of logical networks from experimental data** would allow for identifying admissible large-scale logic models saving a lot of efforts and without any a priori bias. Next, once a family a logical networks has been identified, one can suggest or **design new experiments** in order to reduce the uncertainty provided by this family. Finally, one can **look for intervention strategies** that force a set of target species or compounds into a desired steady state. Altogether, this constitutes a pipeline for automated reasoning on logical signaling networks. Hence, the aim of **caspo** is to implement such a pipeline providing a powerful and easy-to-use software tool for systems biologists.\r\n\r\nDocumentation\r\n~~~~~~~~~~~~~\r\n\r\nDetailed documentation about how to install and use **caspo** is\r\navailable at http://caspo.readthedocs.io.\r\n\r\nSamples\r\n~~~~~~~\r\n\r\nSample files are included with **caspo** and available for `download`_\r\n\r\nRelated publications\r\n~~~~~~~~~~~~~~~~~~~~\r\n\r\n-  Designing experiments to discriminate families of logic models.\r\n   (2015). Frontiers in Bioengineering and Biotechnology 3:131. `DOI`_\r\n\r\n-  Learning Boolean logic models of signaling networks with ASP. (2015).\r\n   Theoretical Computer Science.\r\n   `DOI <http://dx.doi.org/10.1016/j.tcs.2014.06.022>`__\r\n\r\n-  Reasoning on the Response of Logical Signaling Networks with ASP.\r\n   (2014). John Wiley & Sons, Inc.\r\n   `DOI <http://dx.doi.org/10.1002/9781119005223.ch2>`__\r\n\r\n-  Minimal intervention strategies in logical signaling networks with\r\n   ASP. (2013). Theory and Practice of Logic Programming.\r\n   `DOI <http://dx.doi.org/10.1017/S1471068413000422>`__\r\n\r\n-  Exhaustively characterizing feasible logic models of a signaling\r\n   network using Answer Set Programming. (2013). Bioinformatics.\r\n   `DOI <http://dx.doi.org/10.1093/bioinformatics/btt393>`__\r\n\r\n-  Revisiting the Training of Logic Models of Protein Signaling Networks\r\n   with a Formal Approach based on Answer Set Programming. (2012) The\r\n   10th Conference on Computational Methods in Systems Biology.\r\n   `DOI <http://dx.doi.org/10.1007/978-3-642-33636-2_20>`__\r\n\r\n.. _download: http://bioasp.github.io/caspo/data.zip\r\n.. _DOI: http://dx.doi.org/10.3389/fbioe.2015.00131\r\n\r\n.. |Build Status| image:: https://travis-ci.org/bioasp/caspo.svg?branch=v3.0.1\r\n   :target: https://travis-ci.org/bioasp/caspo\r\n.. |Documentation Status| image:: https://readthedocs.org/projects/caspo/badge/?version=v3.0.1\r\n   :target: http://caspo.readthedocs.io/en/v3.0.1/?badge=v3.0.1\r\n.. |license| image:: https://img.shields.io/badge/license-GPLv3+-brightgreen.svg\r\n   :target: https://www.gnu.org/licenses/gpl.html",
        "description_content_type": null,
        "docs_url": "https://pythonhosted.org/caspo/",
        "download_url": "",
        "downloads": {
            "last_day": -1,
            "last_month": -1,
            "last_week": -1
        },
        "home_page": "http://bioasp.github.io/caspo/",
        "keywords": "logical signaling networks systems biology answer set programming",
        "license": "GPLv3+",
        "maintainer": "",
        "maintainer_email": "",
        "name": "caspo",
        "package_url": "https://pypi.org/project/caspo/",
        "platform": "UNKNOWN",
        "project_url": "https://pypi.org/project/caspo/",
        "project_urls": {
            "Homepage": "http://bioasp.github.io/caspo/"
        },
        "release_url": "https://pypi.org/project/caspo/3.0.1/",
        "requires_dist": null,
        "requires_python": "",
        "summary": "Reasoning on the response of logical signaling networks with Answer Set Programming",
        "version": "3.0.1"
    },
    "last_serial": 2382204,
    "releases": {
        "1.0": [
            {
                "comment_text": "",
                "digests": {
                    "md5": "0bf263aa083d9f4035dad4d3a898d450",
                    "sha256": "21bfa2dbbe2d2819af85be5c64c3217dd3fb15ad4b442411fb5d3b8524201fb6"
                },
                "downloads": -1,
                "filename": "caspo-1.0.tar.gz",
                "has_sig": false,
                "md5_digest": "0bf263aa083d9f4035dad4d3a898d450",
                "packagetype": "sdist",
                "python_version": "source",
                "requires_python": null,
                "size": 20723,
                "upload_time": "2012-12-03T18:35:20",
                "url": "https://files.pythonhosted.org/packages/1a/44/c55aaa5d45e407647bd4035cf425bbe3947c3c87c1bbd15d4b3b761d6391/caspo-1.0.tar.gz"
            }
        ],
        "1.1": [
            {
                "comment_text": "",
                "digests": {
                    "md5": "c0cd482fdd78168d8fac1b08422077c8",
                    "sha256": "1268540ce9b825e148bec4e34c72f6d807b98250ad783ca630e39ec677ede5bf"
                },
                "downloads": -1,
                "filename": "caspo-1.1.tar.gz",
                "has_sig": false,
                "md5_digest": "c0cd482fdd78168d8fac1b08422077c8",
                "packagetype": "sdist",
                "python_version": "source",
                "requires_python": null,
                "size": 20737,
                "upload_time": "2012-12-20T17:52:07",
                "url": "https://files.pythonhosted.org/packages/ca/62/8ce8703c2c627623d0e10e0c3222538723d65ed2a8a7ea2e70c4582184bd/caspo-1.1.tar.gz"
            }
        ],
        "1.1dev": [],
        "1.2": [
            {
                "comment_text": "",
                "digests": {
                    "md5": "9b83acb0046cface2d20e6078b925871",
                    "sha256": "5d0325769f602030d07b365c6be282821fb9ac5764a99b30a47fad3944da6da8"
                },
                "downloads": -1,
                "filename": "caspo-1.2.tar.gz",
                "has_sig": false,
                "md5_digest": "9b83acb0046cface2d20e6078b925871",
                "packagetype": "sdist",
                "python_version": "source",
                "requires_python": null,
                "size": 23233,
                "upload_time": "2013-02-05T19:08:11",
                "url": "https://files.pythonhosted.org/packages/e2/62/cbaedf59abd778d4d7cd241ccf60466963ba8397b7c925798fdcd19e14dd/caspo-1.2.tar.gz"
            }
        ],
        "1.3": [
            {
                "comment_text": "",
                "digests": {
                    "md5": "21e3162be6afbcd0ed98742c06331f2d",
                    "sha256": "e5d8bf4172facaa867edbcab9c126b698d962670861ac1c996064a230c6369ea"
                },
                "downloads": -1,
                "filename": "caspo-1.3.tar.gz",
                "has_sig": false,
                "md5_digest": "21e3162be6afbcd0ed98742c06331f2d",
                "packagetype": "sdist",
                "python_version": "source",
                "requires_python": null,
                "size": 29477,
                "upload_time": "2013-03-08T14:29:13",
                "url": "https://files.pythonhosted.org/packages/f4/94/648e8373ab68f7345e24aedbeb6821036e3255e2556b5b3adfe0cbd97b7a/caspo-1.3.tar.gz"
            }
        ],
        "1.4": [
            {
                "comment_text": "",
                "digests": {
                    "md5": "2abe16a2b4089f293065a49ab2abc7a3",
                    "sha256": "7b5eb5f605fc998f29d23f9b7e71412e6f5350d02b3687c2643ae460963cc3bc"
                },
                "downloads": -1,
                "filename": "caspo-1.4.tar.gz",
                "has_sig": false,
                "md5_digest": "2abe16a2b4089f293065a49ab2abc7a3",
                "packagetype": "sdist",
                "python_version": "source",
                "requires_python": null,
                "size": 27595,
                "upload_time": "2013-06-10T09:08:20",
                "url": "https://files.pythonhosted.org/packages/80/8d/1141cacc1f869ff22f71e24575edd889a02ac74c7d94c1ea117de1bd1faf/caspo-1.4.tar.gz"
            }
        ],
        "1.5": [
            {
                "comment_text": "",
                "digests": {
                    "md5": "a00e4e674471a28a39b68a7a7a14af31",
                    "sha256": "5417487890828f250ce8673b0eb0ca13fe8a705d4ec4faaaacfa7c67409ede33"
                },
                "downloads": -1,
                "filename": "caspo-1.5.tar.gz",
                "has_sig": false,
                "md5_digest": "a00e4e674471a28a39b68a7a7a14af31",
                "packagetype": "sdist",
                "python_version": "source",
                "requires_python": null,
                "size": 33120,
                "upload_time": "2014-01-19T19:25:28",
                "url": "https://files.pythonhosted.org/packages/07/d1/c7ea0643218066468e3d855d3916ac85048adfd71291aef73282da2de790/caspo-1.5.tar.gz"
            }
        ],
        "1.6": [
            {
                "comment_text": "",
                "digests": {
                    "md5": "b633056fc979cb737b28de800841f3c4",
                    "sha256": "5fc34583976d8fb039d2bad3b4bea7a0eaf5c95b8af90b38ae83a4b822828370"
                },
                "downloads": -1,
                "filename": "caspo-1.6.tar.gz",
                "has_sig": false,
                "md5_digest": "b633056fc979cb737b28de800841f3c4",
                "packagetype": "sdist",
                "python_version": "source",
                "requires_python": null,
                "size": 33256,
                "upload_time": "2014-01-27T10:45:06",
                "url": "https://files.pythonhosted.org/packages/84/8f/b80ab5f5b558311b05880740e89b7c6b1ecf36b420f5d770c9b5ced76512/caspo-1.6.tar.gz"
            }
        ],
        "1.7": [
            {
                "comment_text": "",
                "digests": {
                    "md5": "09859c64ebf83677dbbe8695ec0d1207",
                    "sha256": "091a3d7dbdf96db60173d9bbc899759224d35537189de10174ce71b8e7d8195e"
                },
                "downloads": -1,
                "filename": "caspo-1.7.tar.gz",
                "has_sig": false,
                "md5_digest": "09859c64ebf83677dbbe8695ec0d1207",
                "packagetype": "sdist",
                "python_version": "source",
                "requires_python": null,
                "size": 33384,
                "upload_time": "2014-02-03T10:37:41",
                "url": "https://files.pythonhosted.org/packages/93/97/b5b7fd701937f915ef72cd6f103fd6b36c6b879bfe194277b09abca144a3/caspo-1.7.tar.gz"
            }
        ],
        "2.0.0": [
            {
                "comment_text": "",
                "digests": {
                    "md5": "66be645b871a4ff521258ce07bd8601d",
                    "sha256": "0e9ef15a7081673e1e9671faad0dc2449f3cbe698fe45063df65a8ed507bb896"
                },
                "downloads": -1,
                "filename": "caspo-2.0.0.tar.gz",
                "has_sig": false,
                "md5_digest": "66be645b871a4ff521258ce07bd8601d",
                "packagetype": "sdist",
                "python_version": "source",
                "requires_python": null,
                "size": 47942,
                "upload_time": "2014-03-24T11:32:09",
                "url": "https://files.pythonhosted.org/packages/72/4e/3dc1c26eca3cdf189c9cbc69d43b891c69a322f6779994471dfa557b7921/caspo-2.0.0.tar.gz"
            }
        ],
        "2.0.1": [
            {
                "comment_text": "",
                "digests": {
                    "md5": "951d3ba72602a525dc5511fc3030467c",
                    "sha256": "f85b246debbb138286757299783ad9c91d8df6402db7011ae1abc91e446de660"
                },
                "downloads": -1,
                "filename": "caspo-2.0.1.tar.gz",
                "has_sig": false,
                "md5_digest": "951d3ba72602a525dc5511fc3030467c",
                "packagetype": "sdist",
                "python_version": "source",
                "requires_python": null,
                "size": 48055,
                "upload_time": "2014-04-18T16:03:54",
                "url": "https://files.pythonhosted.org/packages/35/be/f370da86bab9da6dded22d9fa602824e647ed2f33b9e3b7b2e57b716357d/caspo-2.0.1.tar.gz"
            }
        ],
        "2.1.0": [
            {
                "comment_text": "",
                "digests": {
                    "md5": "80ff2306faddf633d3a3c662fdc34169",
                    "sha256": "addf62186b4740b9b387eff24706121cb34e6a4e39006dca9f756e1c03964026"
                },
                "downloads": -1,
                "filename": "caspo-2.1.0.tar.gz",
                "has_sig": false,
                "md5_digest": "80ff2306faddf633d3a3c662fdc34169",
                "packagetype": "sdist",
                "python_version": "source",
                "requires_python": null,
                "size": 50022,
                "upload_time": "2014-08-28T14:23:56",
                "url": "https://files.pythonhosted.org/packages/af/39/b82e2944694d74221dd95ceda918ccd7f550336c2ea6c0928f78bacec808/caspo-2.1.0.tar.gz"
            }
        ],
        "2.1.1": [
            {
                "comment_text": "",
                "digests": {
                    "md5": "af7b0862c0e1d408e455ba2d70ba060f",
                    "sha256": "3c7ae4fa1182b0d59e0a2217cede523f944351c46b6aca79361846df4125cbd0"
                },
                "downloads": -1,
                "filename": "caspo-2.1.1.tar.gz",
                "has_sig": false,
                "md5_digest": "af7b0862c0e1d408e455ba2d70ba060f",
                "packagetype": "sdist",
                "python_version": "source",
                "requires_python": null,
                "size": 50141,
                "upload_time": "2014-08-30T11:40:42",
                "url": "https://files.pythonhosted.org/packages/b8/6c/a8f0579ce761d441e612ce31e61072eb979289c9be8e8d65d0d6a6449501/caspo-2.1.1.tar.gz"
            }
        ],
        "2.2.0": [
            {
                "comment_text": "",
                "digests": {
                    "md5": "1ad001f2a91d248c0490d9fc068b32dd",
                    "sha256": "e0f06c4f4dda63f5c2c9c29a3769a2b09eaabc2e57dd42966da8ba8c06564af7"
                },
                "downloads": -1,
                "filename": "caspo-2.2.0.tar.gz",
                "has_sig": false,
                "md5_digest": "1ad001f2a91d248c0490d9fc068b32dd",
                "packagetype": "sdist",
                "python_version": "source",
                "requires_python": null,
                "size": 51716,
                "upload_time": "2015-08-06T03:16:39",
                "url": "https://files.pythonhosted.org/packages/ca/7f/e4af1d69c463f0dbc804a1095f7fcb3a027be459a2159d9affaa18db9e42/caspo-2.2.0.tar.gz"
            }
        ],
        "3.0.0.post2": [
            {
                "comment_text": "",
                "digests": {
                    "md5": "020e4ccc1ed7d72fb6825ed4affc8516",
                    "sha256": "f2deef30d35f6cddf9479f422e3fed45b1decfcd306ea269f173fe94f79dc612"
                },
                "downloads": -1,
                "filename": "caspo-3.0.0.post2-py2-none-any.whl",
                "has_sig": false,
                "md5_digest": "020e4ccc1ed7d72fb6825ed4affc8516",
                "packagetype": "bdist_wheel",
                "python_version": "py2",
                "requires_python": null,
                "size": 62691,
                "upload_time": "2016-08-06T19:46:03",
                "url": "https://files.pythonhosted.org/packages/43/68/a0a49cf257f2fe371f16834dd9a4980208a1999d9d2a22cc9d95134cb90c/caspo-3.0.0.post2-py2-none-any.whl"
            },
            {
                "comment_text": "",
                "digests": {
                    "md5": "4617ddf48168227d7c13864d2fa0e654",
                    "sha256": "08e7045998e2739599f8e1699fe0116e56ccce3759b1021324503857d4b9e6e4"
                },
                "downloads": -1,
                "filename": "caspo-3.0.0.post2.tar.gz",
                "has_sig": false,
                "md5_digest": "4617ddf48168227d7c13864d2fa0e654",
                "packagetype": "sdist",
                "python_version": "source",
                "requires_python": null,
                "size": 978022,
                "upload_time": "2016-08-06T19:46:24",
                "url": "https://files.pythonhosted.org/packages/d5/82/ec6666b5989bb84c83ab0f75f57b32949a3c2a3ad209fa25f62edc59cdb4/caspo-3.0.0.post2.tar.gz"
            }
        ],
        "3.0.1": [
            {
                "comment_text": "",
                "digests": {
                    "md5": "6973c1ccc0d9e85bb4915325458c062d",
                    "sha256": "5dd23f75351138774afed7ea50257d9fee4f368baedb83bbf4eab163d98d1c0d"
                },
                "downloads": -1,
                "filename": "caspo-3.0.1-py2-none-any.whl",
                "has_sig": false,
                "md5_digest": "6973c1ccc0d9e85bb4915325458c062d",
                "packagetype": "bdist_wheel",
                "python_version": "py2",
                "requires_python": null,
                "size": 63522,
                "upload_time": "2016-10-05T14:59:39",
                "url": "https://files.pythonhosted.org/packages/f6/88/65dc1f403a5407b2188161003f8095b17fbd16dcee679884f14c0aa91c89/caspo-3.0.1-py2-none-any.whl"
            },
            {
                "comment_text": "",
                "digests": {
                    "md5": "02f45a760a5e4b3fbe206eb0eed5e4f2",
                    "sha256": "432d961ca2f6bd107fb70a68713d1a9ab82233893594baa96bcb586ce2440ab3"
                },
                "downloads": -1,
                "filename": "caspo-3.0.1.tar.gz",
                "has_sig": false,
                "md5_digest": "02f45a760a5e4b3fbe206eb0eed5e4f2",
                "packagetype": "sdist",
                "python_version": "source",
                "requires_python": null,
                "size": 979052,
                "upload_time": "2016-10-05T14:59:43",
                "url": "https://files.pythonhosted.org/packages/2f/21/498dc5b1a1a70f54f9f537acfe4ea0047be36d843829a0e26add6aca74d7/caspo-3.0.1.tar.gz"
            }
        ]
    },
    "urls": [
        {
            "comment_text": "",
            "digests": {
                "md5": "6973c1ccc0d9e85bb4915325458c062d",
                "sha256": "5dd23f75351138774afed7ea50257d9fee4f368baedb83bbf4eab163d98d1c0d"
            },
            "downloads": -1,
            "filename": "caspo-3.0.1-py2-none-any.whl",
            "has_sig": false,
            "md5_digest": "6973c1ccc0d9e85bb4915325458c062d",
            "packagetype": "bdist_wheel",
            "python_version": "py2",
            "requires_python": null,
            "size": 63522,
            "upload_time": "2016-10-05T14:59:39",
            "url": "https://files.pythonhosted.org/packages/f6/88/65dc1f403a5407b2188161003f8095b17fbd16dcee679884f14c0aa91c89/caspo-3.0.1-py2-none-any.whl"
        },
        {
            "comment_text": "",
            "digests": {
                "md5": "02f45a760a5e4b3fbe206eb0eed5e4f2",
                "sha256": "432d961ca2f6bd107fb70a68713d1a9ab82233893594baa96bcb586ce2440ab3"
            },
            "downloads": -1,
            "filename": "caspo-3.0.1.tar.gz",
            "has_sig": false,
            "md5_digest": "02f45a760a5e4b3fbe206eb0eed5e4f2",
            "packagetype": "sdist",
            "python_version": "source",
            "requires_python": null,
            "size": 979052,
            "upload_time": "2016-10-05T14:59:43",
            "url": "https://files.pythonhosted.org/packages/2f/21/498dc5b1a1a70f54f9f537acfe4ea0047be36d843829a0e26add6aca74d7/caspo-3.0.1.tar.gz"
        }
    ]
}