{ "info": { "author": "Keji Li", "author_email": "user@keji.li", "bugtrack_url": null, "classifiers": [], "description": "Ca2Spike\n========\n\nDeconvolve calcium imaging data to spikes. A wrapper around Chenkov and\nMcColgan so it\u2019s easier to use their model and weights. Assuming you\nhave a imageJ roi measurement csv file, and a known sample_rate of your\ntwo photon recording:\n\n.. code:: python\n\n import numpy as np\n from ca2spike import deconvolve\n calcium_data = np.genfromtxt(file_path, delimiter=',')[1:, 1::4].T\n spike_data, timestamps, new_sample_rate = deconvolve(data, sample_rate)\n\nHere the new sample rate is just a rounded int, coz otherwise your\nanalysis experience will suck.\n", "description_content_type": "", "docs_url": null, "download_url": "", "downloads": { "last_day": -1, "last_month": -1, "last_week": -1 }, "home_page": "", "keywords": "", "license": "", "maintainer": "", "maintainer_email": "", "name": "ca2spike", "package_url": "https://pypi.org/project/ca2spike/", "platform": "", "project_url": "https://pypi.org/project/ca2spike/", "project_urls": null, "release_url": "https://pypi.org/project/ca2spike/0.1.3/", "requires_dist": null, "requires_python": "", "summary": "convert calcium trace to spikes", "version": "0.1.3" }, "last_serial": 4016986, "releases": { "0.1.0": [ { "comment_text": "", "digests": { "md5": "f761a5b5b69a8bb740613bdfc2b9f76a", "sha256": "caeafdedc5f1be1207949de238cf5af2664d34c5ee0de1a29f988724e9593329" }, "downloads": -1, "filename": "ca2spike-0.1.0.tar.gz", "has_sig": false, "md5_digest": "f761a5b5b69a8bb740613bdfc2b9f76a", "packagetype": "sdist", "python_version": "source", "requires_python": null, "size": 2641, "upload_time": "2018-06-29T23:23:00", "url": "https://files.pythonhosted.org/packages/f0/af/de3c8363d9046d93c1d5ab10c2a6dfd1ed4f3f57f565ffc82e4ff25d2865/ca2spike-0.1.0.tar.gz" } ], "0.1.2": [ { "comment_text": "", "digests": { "md5": "f3cceae9422f775664f920ac52bb2056", "sha256": "97d5f9337f13405b3c43bc5bd5e51115fccc6b2b46366ba1d95746ea4889b89b" }, "downloads": -1, "filename": "ca2spike-0.1.2.tar.gz", "has_sig": false, "md5_digest": "f3cceae9422f775664f920ac52bb2056", "packagetype": "sdist", "python_version": "source", "requires_python": null, "size": 107519, "upload_time": "2018-06-29T23:32:52", "url": "https://files.pythonhosted.org/packages/92/24/bf7cb17a83b9f083766db61156f508ee54f710220bbc4d031d3574fc4f79/ca2spike-0.1.2.tar.gz" } ], "0.1.3": [ { "comment_text": "", "digests": { "md5": "d4c57c14e671eea8c44931b00df5e652", "sha256": "9875e4eff9f4556559f480e9b0bdb1904bee0ad991c0acd912b2e9d6daca0b15" }, "downloads": -1, "filename": "ca2spike-0.1.3.tar.gz", "has_sig": false, "md5_digest": "d4c57c14e671eea8c44931b00df5e652", "packagetype": "sdist", "python_version": "source", "requires_python": null, "size": 107650, "upload_time": "2018-06-29T23:34:27", "url": "https://files.pythonhosted.org/packages/c2/41/cbf77db3fc2dd26e129ca9a6e3142f90cbc94221a5e5ce5260032cc3801d/ca2spike-0.1.3.tar.gz" } ] }, "urls": [ { "comment_text": "", "digests": { "md5": "d4c57c14e671eea8c44931b00df5e652", "sha256": "9875e4eff9f4556559f480e9b0bdb1904bee0ad991c0acd912b2e9d6daca0b15" }, "downloads": -1, "filename": "ca2spike-0.1.3.tar.gz", "has_sig": false, "md5_digest": "d4c57c14e671eea8c44931b00df5e652", "packagetype": "sdist", "python_version": "source", "requires_python": null, "size": 107650, "upload_time": "2018-06-29T23:34:27", "url": "https://files.pythonhosted.org/packages/c2/41/cbf77db3fc2dd26e129ca9a6e3142f90cbc94221a5e5ce5260032cc3801d/ca2spike-0.1.3.tar.gz" } ] }