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        "author": "Lucas Bourneuf",
        "author_email": "lucas.bourneuf@laposte.net",
        "bugtrack_url": null,
        "classifiers": [
            "Development Status :: 4 - Beta",
            "Intended Audience :: Science/Research",
            "License :: OSI Approved :: GNU General Public License (GPL)",
            "Natural Language :: English",
            "Programming Language :: Python :: 3",
            "Programming Language :: Python :: 3.5",
            "Programming Language :: Python :: 3.6",
            "Programming Language :: Python :: 3.7",
            "Topic :: Software Development :: Libraries :: Python Modules"
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        "description": "# bubble-tools\npython routines related to bubble format, usable in CLI or as a library.\n\n## Installation\n\n    pip install bubbletools\n\nSee below for usage.\n\n\n## Features\n- [X] bubble to python\n- [X] bubble to [gexf](https://gephi.org/gexf/format/)\n- [ ] bubble to cytoscape.js\n    - [X] working implementation\n    - [X] test on fully valid bubble\n    - [ ] unit testing\n    - [ ] test on big graphs, for benchmarking (will probably not scale)\n- [ ] bubble to dot (via [graphviz](http://graphviz.readthedocs.io/en/latest/))\n    - [X] working implementation\n    - [X] test on fully valid bubble\n    - [ ] unit testing\n    - [ ] test on big graphs, for benchmarking (will probably not scale)\n- [ ] python to bubble\n- [ ] dot to python\n- [ ] unit testing on bubble describing cliques\n\n\n## CLI\n`bubbletools` is usable through CLI.\n\n### validation\nusage:\n\n    python3 -m bubbletools validate path/to/bubble/file\n\nTry hard to find errors and inconsistancies in the given bubble file\n\nSpot powernode overlapping, inclusions inconsistancies\nand empty or singleton powernodes.\nProfiling gives general informations about the file data.\n\n### conversion to dot\nusage:\n\n    python3 bubbletool.py dot path/to/bubble/file path/to/output/file\n\nConvert given bubble file in dot format.\nThe optional `--render` flag can be used to show the graph after saving.\n\nSame API is available for gexf format.\n\n### conversion to cytoscape.js\nusage:\n\n    python3 -m bubbletools js path/to/bubble/file path/to/output/dir\n\nConvert given bubble file in a fully working website using cytoscape.js to render the graph.\nThe optional `--render` flag can be used to run the default web browser on the generated website.\nSee Makefile recipe `js` for a usage example.\n\nA website is a collection of files (css, js, html), with only one of them (`js/graph.js`)\nthat changes according to the input data.\n\nIf the `path/to/output/dir` has a `.js` extension, only the `js/graph.js` file will be generated.\nThis allow one to generates only the changing parts, not the full website each time.\nSee Makefile recipe `js-per-file` for a usage example.\n\n\n## python API\nSubmodules `validator` and `converter` provides the functionnalities described above for CLI:\n\n    from bubbletools import validate, convert\n\n    for log in validate(open('path/to/bubble.lp'), profiling=True):\n        print(log)\n    convert.to_dot(open('path/to/bubble.lp'), dotfile='path/to/dot.dot')\n\n### python representation of the graph\nA lower level interface is the `BubbleTree` object, allowing one to manipulate the graph depicted by bubble data as python object.\nSee [unit tests](bubbletools/test/test_bbltree.py) for example of `BubbleTree` usage.\n\n    from bubbletools import BubbleTree\n\n    tree = BubbleTree.from_bubble_file('path/to/bubble.lp')\n    print(tree.edges, tree.inclusions, tree.roots)\n\n`edges` is a mapping `predecessor -> set of successors`,\n`inclusions` is a mapping `(power)node -> set of (power)nodes directly contained`,\nand `roots` is a set of (power)nodes that are contained by nothing.\n\nThis representation holds all the data necessary for most work on the bubble.\nThe `BubbleTree.connected_components` function maps a graph with its connected components:\n\n    cc, subroots = BubbleTree.connected_components()\n\nWhere `cc` and `subroots` are both mappings, respectively linking *the* root of a connected component with all nodes of the connected component,\nand *the* root of a connected component with the other roots of the same connected component.\nThus, connected components are identified by one of their roots, which is key is both dictionaries.\n\n\n### access powernodes and their data\nFollow an example of `BubbleTree` usage, retrieving data on powernodes:\n\n    tree = BubbleTree.from_bubble_file('bubbles/basic.bbl')\n    for pnode in tree.powernodes:\n        data = tree.powernode_data(pnode)\n        print(\n            \"{} contains nodes {{{}}}, and powernodes {{{}}}.\"\n            \"\".format(pnode, data.contained_nodes, data.contained_pnodes)\n        )",
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