{ "info": { "author": "Yauhen Yakimovich", "author_email": "yauhen.yakimovich@uzh.ch", "bugtrack_url": null, "classifiers": [ "Development Status :: 4 - Beta", "Intended Audience :: Developers", "Intended Audience :: System Administrators", "Operating System :: MacOS", "Operating System :: POSIX :: Linux", "Programming Language :: Java", "Programming Language :: Python", "Programming Language :: Ruby", "Programming Language :: Unix Shell", "Topic :: Internet :: WWW/HTTP :: Dynamic Content", "Topic :: Scientific/Engineering :: Image Recognition", "Topic :: Scientific/Engineering :: Information Analysis", "Topic :: System :: Distributed Computing", "Topic :: System :: Emulators" ], "description": "

\"logo\"

\n\n##About *brainy*\n\n*brainy* is a nimble workflow managing tool, at the core of [iBRAIN](https://github.com/pelkmanslab/iBRAIN/) functionality. It allows creation of projects according to the expected framework layout. It also oversees the execution of the projects and provides monitoring of any relevant progress of the conducted computation.\n\n##iBRAIN\n\niBRAIN is a software framework for scientific computation primarily applied for BigData extraction and analysis in context of HPC and HTS as well as large bioinformatical analysis.\n\n##Documentation\n\nA really good place to understand what is `brainy` is to read the *user manual*:\n\n * [User manual](https://github.com/pelkmanslab/brainy/wiki/User-Manual)\n * [Developer Documentation](https://github.com/pelkmanslab/brainy/wiki/Developer-Documentation)\n \n > Tip: get help about the commands you need by saying `brainy help` or `brainy help project`\n\n\n##Getting started\n\nCreate you first project\n\n```\nbrainy create project PureAwesomeness --from demo\n```\n\nGo inside the project folder and adjust settings in your pipelines. Afterwards run the project.\n\n```\ncd PureAwesomeness\n# Adjust settings in .brainy and hello.br YAML files\nbrainy run project\n```\n\nTo see the report in your local web browser, do \n```\nbrainy ui serve\n```\n\nIf things are looking good, continue by submitting your project into the *cloud*. Find out how to do this in the [Cloud](https://github.com/pelkmanslab/brainy/wiki/User-Manual#Cloud) section of the brainy's User Manual. \n\n##Installation\n\n> On Ubuntu (debian): sudo apt-get install python-setuptools git && sudo easy_install pip\n\n> On Mac: brew install libyaml\n\n>It is strongly recommended to use [conda](http://conda.pydata.org/docs/) as python 2.7+ environment.\n\nThe package is available on [PyPI](https://pypi.python.org/pypi/brainy-mind/).\n\n\n```\npip install brainy-mind\n```\n\nTo get the bleedding edge version you have to clone the repository and install brainy in developer mode from local folder:\n\n```\ncd && git clone https://github.com/pelkmanslab/brainy\ncd brainy && pip install -e .\n```\n\nOnce installed, inspect the state of configuration in `~/.brainy/` folder.\n\nRemember that you can generate `~/.brainy/config` from the template again by\n\n```\nbrainy init config\n```\n\nYou will have to edit the template that has been copied according to your cluster scheduler settings and so on.\n\n> Supported OS/platforms are **Linux** and **Mac OSX**.\n\n##Tests\n\nTo run nose tests navigate into\n\n```\ncd tests && nosetests -s\n```", "description_content_type": null, "docs_url": null, "download_url": "https://github.com/pelkmanslab/brainy/tarball/master", "downloads": { "last_day": -1, "last_month": -1, "last_week": -1 }, "home_page": "https://github.com/pelkmanslab/brainy", "keywords": null, "license": "MIT", "maintainer": null, "maintainer_email": null, "name": "brainy-mind", "package_url": "https://pypi.org/project/brainy-mind/", "platform": "Linux,OS-X", "project_url": "https://pypi.org/project/brainy-mind/", "project_urls": { "Download": "https://github.com/pelkmanslab/brainy/tarball/master", "Homepage": "https://github.com/pelkmanslab/brainy" }, "release_url": "https://pypi.org/project/brainy-mind/0.2.1/", "requires_dist": null, "requires_python": null, "summary": "brainy is a nimble workflow managing tool which is a part of iBRAIN framework for scientific computation primarily applied for BigData analysis in context of HPC and HTS", "version": "0.2.1" }, "last_serial": 1502148, "releases": { "0.1.11": [ { "comment_text": "", "digests": { "md5": "f5e4144e45b4bd7f4ad5c68abb046a6a", "sha256": "382267dfb98ecab89230e9ef1ab0506d45bdd631803c7dfabdf67f3809007fda" }, "downloads": -1, "filename": "brainy-mind-0.1.11.tar.gz", "has_sig": false, "md5_digest": "f5e4144e45b4bd7f4ad5c68abb046a6a", "packagetype": "sdist", "python_version": "source", "requires_python": null, "size": 53434, "upload_time": "2015-04-01T17:14:20", "url": "https://files.pythonhosted.org/packages/c6/dd/bd3db46b61935dde02ae544a43c1e4e374480d28861fbb242727acf005e1/brainy-mind-0.1.11.tar.gz" } ], "0.1.12": [ { "comment_text": "", "digests": { "md5": "f5206fc76f3a1f76b00014787cc4e6d6", "sha256": "35286d6a56789c9609db6bbefb87e7c9bda05b114615eadd845e5cd78f7d4d05" }, "downloads": -1, "filename": "brainy-mind-0.1.12.tar.gz", "has_sig": false, "md5_digest": "f5206fc76f3a1f76b00014787cc4e6d6", "packagetype": "sdist", "python_version": "source", "requires_python": null, "size": 53465, "upload_time": "2015-04-01T17:38:34", "url": "https://files.pythonhosted.org/packages/bf/f1/4b0060e11f30ecf59f42b5a730768a9f7a329011f659d1ed1cef30de7708/brainy-mind-0.1.12.tar.gz" } ], "0.1.13": [ { "comment_text": "", "digests": { "md5": "9078478a6d37f211e93b90bf477045f4", "sha256": "4942ac7650d31ae9bac8a8750eb633b3d4bf692a40331974d96ced95289b8c35" }, "downloads": -1, "filename": "brainy-mind-0.1.13.tar.gz", "has_sig": false, "md5_digest": "9078478a6d37f211e93b90bf477045f4", "packagetype": "sdist", "python_version": "source", "requires_python": null, "size": 53472, "upload_time": "2015-04-01T17:43:10", "url": "https://files.pythonhosted.org/packages/f8/ba/cb1f9035769d20cc75b1b507d7478dfeac0952d2a2695730f3524711a737/brainy-mind-0.1.13.tar.gz" } ], "0.1.14": [ { "comment_text": "", "digests": { "md5": "50d2295051628f2ae03176a34c5abd8e", "sha256": "83ee0c5fe77fca2a2e23c88e173082ab040c23ba8dcb0a09a102ae2c082e6e41" }, "downloads": -1, "filename": "brainy-mind-0.1.14.tar.gz", "has_sig": false, "md5_digest": "50d2295051628f2ae03176a34c5abd8e", "packagetype": "sdist", "python_version": "source", "requires_python": null, "size": 54987, "upload_time": "2015-04-01T18:28:20", "url": "https://files.pythonhosted.org/packages/ef/e6/b741705a1eabe4cbb9bb20d02267caa74bee156d9155978fb4528c940318/brainy-mind-0.1.14.tar.gz" } ], "0.1.15": [ { "comment_text": "", "digests": { "md5": "8c185f0f31c9fc9efb953b41636f6473", "sha256": "1a6c1b63a19ebcd39808b5087dc85b20623b0baa5fbf0d14ce25cd5beb72cfc6" }, "downloads": -1, "filename": "brainy-mind-0.1.15.tar.gz", "has_sig": false, "md5_digest": "8c185f0f31c9fc9efb953b41636f6473", "packagetype": "sdist", "python_version": "source", "requires_python": null, "size": 54987, "upload_time": "2015-04-01T18:46:57", "url": "https://files.pythonhosted.org/packages/c9/44/0117577b183809cad6d0bfccf090e7b5efc43764645ec36c905073fc83aa/brainy-mind-0.1.15.tar.gz" } ], "0.1.16": [ { "comment_text": "", "digests": { "md5": "65103519e6b1e0f4a553660716e36767", "sha256": "24afd744e820222a6464eb78f6be026972b21d53dc773f9089e3341d3417a86b" }, "downloads": -1, "filename": "brainy-mind-0.1.16.tar.gz", "has_sig": false, "md5_digest": "65103519e6b1e0f4a553660716e36767", "packagetype": "sdist", "python_version": "source", "requires_python": null, "size": 54990, "upload_time": "2015-04-01T18:57:25", "url": "https://files.pythonhosted.org/packages/cc/4f/1d88ce35a210834e4ea6376b8f4ac76bd8a00fb71d216e0e3927d0598829/brainy-mind-0.1.16.tar.gz" } ], "0.1.17": [ { "comment_text": "", "digests": { "md5": "b2f52284335adb21e4e678963ec9693f", "sha256": "90646c2452c8c6c206f8d6105d27e0929cc11b94c381bb36c8aacd9c8c5cebbb" }, "downloads": -1, "filename": "brainy-mind-0.1.17.tar.gz", "has_sig": false, "md5_digest": "b2f52284335adb21e4e678963ec9693f", "packagetype": "sdist", "python_version": "source", "requires_python": null, "size": 346469, "upload_time": "2015-04-01T19:27:20", "url": "https://files.pythonhosted.org/packages/d3/fd/0afa742d87dd862d505397c3f05638c82b04754cf80f55035e43172fc02d/brainy-mind-0.1.17.tar.gz" } ], "0.1.18": [ { "comment_text": "", "digests": { "md5": "f8da670961488ac5cae2bafae57b71f2", "sha256": "86fcfa3686291c1528366f3c9dd8f48ffb575d5f5c93dc1e583296ac1923ca5a" }, "downloads": -1, "filename": "brainy-mind-0.1.18.tar.gz", "has_sig": false, "md5_digest": "f8da670961488ac5cae2bafae57b71f2", "packagetype": "sdist", "python_version": "source", "requires_python": null, "size": 346699, "upload_time": "2015-04-01T19:31:48", "url": "https://files.pythonhosted.org/packages/42/a7/adbaa47c96837c4d462e45ada8b14b0a73a67a013f9bbdebf000068501dd/brainy-mind-0.1.18.tar.gz" } ], "0.1.19": [ { "comment_text": "", "digests": { "md5": "cd83c7a4a54d24f99a440cdb4eb58234", "sha256": "10c96260cdf6bac6a6cb30482bc9ed6c96b83a72c97271db46fca8df36822e05" }, "downloads": -1, "filename": "brainy-mind-0.1.19.tar.gz", "has_sig": false, "md5_digest": "cd83c7a4a54d24f99a440cdb4eb58234", "packagetype": "sdist", "python_version": "source", "requires_python": null, "size": 346712, "upload_time": "2015-04-01T19:40:18", "url": "https://files.pythonhosted.org/packages/a4/44/3a473195e90afc526f67bd11c4577072ad9679d34321ad978b42b55d3321/brainy-mind-0.1.19.tar.gz" } ], "0.1.5": [ { "comment_text": "", "digests": { "md5": "f88250467bfa42a482e941e44eb1bd04", "sha256": "ef8d9d077104ee53bc37d7e7fef9937b604fa0fd0cdc01186faa55dc0c38a97b" }, "downloads": -1, "filename": "brainy-mind-0.1.5.tar.gz", "has_sig": false, "md5_digest": "f88250467bfa42a482e941e44eb1bd04", "packagetype": "sdist", "python_version": "source", "requires_python": null, "size": 47767, "upload_time": "2015-03-23T13:03:31", "url": "https://files.pythonhosted.org/packages/8e/2a/0a08c669b538637d1d9cd991ac5f677e2ba57efc5396edc3f49c74f75f35/brainy-mind-0.1.5.tar.gz" } ], "0.1.6": [ { "comment_text": "", "digests": { "md5": "bb8bc5bda2f13fbaf0077b9b6719b7f1", "sha256": "966a0043d6f417ee03b1a0458cce2b22ab4cf4037a5c932717a12245435a9170" }, "downloads": -1, "filename": "brainy-mind-0.1.6.tar.gz", "has_sig": false, "md5_digest": "bb8bc5bda2f13fbaf0077b9b6719b7f1", "packagetype": "sdist", "python_version": "source", "requires_python": null, "size": 51558, "upload_time": "2015-03-26T08:55:53", "url": "https://files.pythonhosted.org/packages/3e/5d/0a7ebd1391aaaca4045215b1c82795a42c63c603e5fa263f9e9648a86b81/brainy-mind-0.1.6.tar.gz" } ], "0.1.7": [ { "comment_text": "", "digests": { "md5": "2315065c60c7c0a11019c070ad1e519f", "sha256": "9c4ddd1dbd865c124cd685450bc0d0f0760f521f81383867c5453c770c2c6ebf" }, "downloads": -1, "filename": "brainy-mind-0.1.7.tar.gz", "has_sig": false, "md5_digest": "2315065c60c7c0a11019c070ad1e519f", "packagetype": "sdist", "python_version": "source", "requires_python": null, "size": 51584, "upload_time": "2015-03-26T11:57:10", "url": "https://files.pythonhosted.org/packages/01/67/0181fa1d59db3383dde28c38b42a45f612d573b7d74fde10801b24b220a6/brainy-mind-0.1.7.tar.gz" } ], "0.2.1": [ { "comment_text": "", "digests": { "md5": "9dfcb057b7c10602ad59d245ae479466", "sha256": "941862aa3dce2a833748ed57f590b7e88b9f948fe716b19a33d5cf974f5168f6" }, "downloads": -1, "filename": "brainy-mind-0.2.1.tar.gz", "has_sig": false, "md5_digest": "9dfcb057b7c10602ad59d245ae479466", "packagetype": "sdist", "python_version": "source", "requires_python": null, "size": 347916, "upload_time": "2015-04-12T13:40:10", "url": "https://files.pythonhosted.org/packages/ab/ef/256bc52c77fb872a732a558f39357a97f88285adc80577c800b96b125f11/brainy-mind-0.2.1.tar.gz" } ] }, "urls": [ { "comment_text": "", "digests": { "md5": "9dfcb057b7c10602ad59d245ae479466", "sha256": "941862aa3dce2a833748ed57f590b7e88b9f948fe716b19a33d5cf974f5168f6" }, "downloads": -1, "filename": "brainy-mind-0.2.1.tar.gz", "has_sig": false, "md5_digest": "9dfcb057b7c10602ad59d245ae479466", "packagetype": "sdist", "python_version": "source", "requires_python": null, "size": 347916, "upload_time": "2015-04-12T13:40:10", "url": "https://files.pythonhosted.org/packages/ab/ef/256bc52c77fb872a732a558f39357a97f88285adc80577c800b96b125f11/brainy-mind-0.2.1.tar.gz" } ] }