{ "info": { "author": "Princeton Neuroscience Institute and Intel Corporation", "author_email": "mihai.capota@intel.com", "bugtrack_url": null, "classifiers": [], "description": "Brain Imaging Analysis Kit\n==========================\n\n.. image:: https://travis-ci.org/brainiak/brainiak.svg?branch=master\n :target: https://travis-ci.org/brainiak/brainiak\n\n.. image:: https://codecov.io/gh/brainiak/brainiak/branch/master/graph/badge.svg\n :target: https://codecov.io/gh/brainiak/brainiak\n\n.. image:: https://badges.gitter.im/brainiak/brainiak.svg\n :alt: Join the chat at https://gitter.im/brainiak/brainiak\n :target: https://gitter.im/brainiak/brainiak?utm_source=badge&utm_medium=badge&utm_campaign=pr-badge&utm_content=badge\n\nThe Brain Imaging Analysis Kit is a package of Python modules useful for\nneuroscience, primarily focused on functional Magnetic Resonance Imaging (fMRI)\nanalysis.\n\nThe package was originally created by a collaboration between Intel and the\nPrinceton Neuroscience Institute (PNI).\n\nTo reduce verbosity, we may refer to the Brain Imaging Analysis Kit using the\n``BrainIAK`` abbreviation. Whenever lowercase spelling is used (e.g., Python\npackage name), we use ``brainiak``.\n\n\nQuickstart\n==========\n\nIf you have `Conda `_::\n\n conda install -c brainiak -c defaults -c conda-forge brainiak\n\nOtherwise, or if you want to compile from source, install the requirements (see\n`docs/installation`) and then install from PyPI::\n\n python3 -m pip install brainiak\n\nNote that we do not support Windows.\n\n\nDocker\n======\n\nYou can also test BrainIAK without installing it using Docker::\n\n docker pull brainiak/brainiak\n docker run -it -p 8888:8888 -v brainiak:/mnt --name demo brainiak/brainiak\n\nTo run Jupyter notebooks in the running container, try::\n\n python3 -m notebook --allow-root --no-browser --ip=0.0.0.0\n\nThen visit http://localhost:8888 in your browser and enter the token. Protip:\nrun ``screen`` before running the notebook command.\n\nNote that we do not support MPI execution using Docker containers and that performance will not be optimal.\n\n\nSupport\n=======\n\nIf you have a question or feedback, chat with us on `Gitter\n`_ or email our list at\nbrainiak@googlegroups.com. If you find a problem with BrainIAK, you can also\n`open an issue on GitHub `_.\n\n\nExamples\n========\n\nWe include BrainIAK usage examples in the examples directory of the code\nrepository, e.g., `funcalign/srm_image_prediction_example.ipynb\n`_.\n\nTo run the examples, download an archive of the `latest BrainIAK release from\nGitHub `_. Note that we only\nsupport the latest release at this moment, so make sure to upgrade your\nBrainIAK installation.\n\n\nDocumentation\n=============\n\nThe documentation is available at http://brainiak.org/docs.\n\n\nContributing\n============\n\nWe welcome contributions. Have a look at the issues labeled \"`easy`_\" for\nstarting contribution ideas. Please read the guide in `CONTRIBUTING.rst`_\nfirst.\n\n.. _easy:\n https://github.com/brainiak/brainiak/issues?q=is%3Aissue+is%3Aopen+label%3Aeasy\n.. _CONTRIBUTING.rst:\n https://github.com/brainiak/brainiak/blob/master/CONTRIBUTING.rst\n\n\nCiting\n======\n\nPlease cite BrainIAK in your publications as: \"Brain Imaging Analysis Kit,\nhttp://brainiak.org.\" Additionally, if you use `RRIDs\n`_ to identify resources, please mention\nBrainIAK as \"Brain Imaging Analysis Kit, RRID:SCR_014824\". 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