{
    "info": {
        "author": "Adam Taranto",
        "author_email": "adam.taranto@anu.edu.au",
        "bugtrack_url": null,
        "classifiers": [
            "Development Status :: 4 - Beta",
            "Environment :: Console",
            "Intended Audience :: Science/Research",
            "License :: OSI Approved :: MIT License",
            "Natural Language :: English",
            "Operating System :: OS Independent",
            "Programming Language :: Python :: 2.7",
            "Programming Language :: Python :: 3",
            "Topic :: Scientific/Engineering :: Bio-Informatics",
            "Topic :: Software Development :: Libraries :: Python Modules"
        ],
        "description": "# Blast-Besties\n\nRapid discovery of reciprocal best blast pairs from BLAST output files.  \n\n\n# Table of contents\n\n* [Example usage](#example-usage)\n  * [Input requirements](#input-requirements)\n* [Standard options](#standard-options)\n* [License](#license) \n\n# Example usage\n\nRun BLASTp for each protein set AvsB and BvsA.\nRequire vaild alignments to cover 95% of the query sequence and with an e-value of < 0.001.\n\n```bash\nblastp -qcov_hsp_perc 95 -query A_prot.fa -subject B_prot.fa -out AvB.tab -evalue 0.001 -outfmt 6 -use_sw_tback\nblastp -qcov_hsp_perc 95 -query B_prot.fa -subject A_prot.fa -out BVA.tab -evalue 0.001 -outfmt 6 -use_sw_tback\n```\n\nReport reciprocal best match pairs where each hit meets criteria e-value \n<= 0.001, hit-length >= 100, bitscore >= 100.  \n\n```bash\n./blastBesties.py -e 0.001 -l 100 -s 100 -a *blastAvB.tab* -b *blastBvA.tab\n```\n\n## Input requirements\n\n  - Takes two BLAST output files as input. SetA vs SetB, and SetB vs SetA.\n  - BLAST output format 6 (tabular)\n  - Hits must be sorted by query name then descending match quality - this is default BLAST behaviour.\n\n# Standard options\n\n```\nUsage: BLAST-Besties [-h] [-v] -a BLASTAVB -b BLASTBVA [-l MINLEN] [-e EVAL]\n                     [-s BITSCORE] [-o OUTFILE] [-d OUTDIR]\n\nOptions:\n\n  # Info\n  -h, --help        Show this help message and exit.\n  -v, --version     Show program's version number and exit.\n  \n  # Input \n  -a, --blastAvB    Blast tab result file for fastaA query against fastaB\n                    subject.\n  -b, --blastBvA    Blast tab result file for fastaB query against fastaA\n                    subject.\n  \n  # Settings\n  -l, --minLen      Minimum length of hit to consider valid.\n  -e, --eVal        Maximum e-value to consider valid pair.\n  -s, --bitScore    Minimum bitscore to consider valid pair.\n\n  # Output\n  -o, --outFile     Write reciprocal blast pairs to this file.\n  -d, --outDir      Directory for new sequence files to be written to.\n```\n\n# License\n\nSoftware provided under MIT license.",
        "description_content_type": null,
        "docs_url": null,
        "download_url": "",
        "downloads": {
            "last_day": -1,
            "last_month": -1,
            "last_week": -1
        },
        "home_page": "https://github.com/Adamtaranto/blast-besties",
        "keywords": "Orthologues,Reciprocal best BLAST",
        "license": "MIT",
        "maintainer": "",
        "maintainer_email": "",
        "name": "blastbesties",
        "package_url": "https://pypi.org/project/blastbesties/",
        "platform": "",
        "project_url": "https://pypi.org/project/blastbesties/",
        "project_urls": {
            "Homepage": "https://github.com/Adamtaranto/blast-besties"
        },
        "release_url": "https://pypi.org/project/blastbesties/1.1.1/",
        "requires_dist": null,
        "requires_python": "",
        "summary": "Rapid discovery of reciprocal best blast pairs from BLAST output files.",
        "version": "1.1.1"
    },
    "last_serial": 3273547,
    "releases": {
        "1.1.1": [
            {
                "comment_text": "",
                "digests": {
                    "md5": "42f74b3b5ba2c11ec3a2a39b1dee79ef",
                    "sha256": "32bcd64d53845150d44e7e158cbb8a8dcaba63be4c2ca8a338daf39724ddde67"
                },
                "downloads": -1,
                "filename": "blastbesties-1.1.1.tar.gz",
                "has_sig": true,
                "md5_digest": "42f74b3b5ba2c11ec3a2a39b1dee79ef",
                "packagetype": "sdist",
                "python_version": "source",
                "requires_python": null,
                "size": 5013,
                "upload_time": "2017-10-23T23:23:38",
                "url": "https://files.pythonhosted.org/packages/86/61/b71bc19d93ac15bf69f2d883ec50ac36b351366d26b81761880ca2775587/blastbesties-1.1.1.tar.gz"
            }
        ]
    },
    "urls": [
        {
            "comment_text": "",
            "digests": {
                "md5": "42f74b3b5ba2c11ec3a2a39b1dee79ef",
                "sha256": "32bcd64d53845150d44e7e158cbb8a8dcaba63be4c2ca8a338daf39724ddde67"
            },
            "downloads": -1,
            "filename": "blastbesties-1.1.1.tar.gz",
            "has_sig": true,
            "md5_digest": "42f74b3b5ba2c11ec3a2a39b1dee79ef",
            "packagetype": "sdist",
            "python_version": "source",
            "requires_python": null,
            "size": 5013,
            "upload_time": "2017-10-23T23:23:38",
            "url": "https://files.pythonhosted.org/packages/86/61/b71bc19d93ac15bf69f2d883ec50ac36b351366d26b81761880ca2775587/blastbesties-1.1.1.tar.gz"
        }
    ]
}