{ "info": { "author": "", "author_email": "", "bugtrack_url": null, "classifiers": [], "description": "Obtain BLAST score ratios (BSRs), for use in comparative genomics and\r\nidentifying horizontally transferred genetic material, from fastA files\r\ncontaining the protein sequences for different organisms.\r\n\r\nBSR (Rasko et al, 2006) is obtained by running BLAST using a reference proteome\r\nagainst one or more other proteomes. The highest BLAST score for each reference\r\nsequence is normalised by dividing by the score for 100% match to the reference\r\nsequence. This analysis can identify shared genetic material in unrelated\r\nstrains or species, and find genes unique to a particular strain, for example.\r\n\r\nA series of BLAST are performed and objects are created for each reference\r\nsequence containing the results of the analysis. Charts showing relative BSR\r\nin the form of a 2-D graph, histogram and heatmap can be quickly generated.\r\n\r\nThis program should be run from within the Python environment using\r\nblast_score_ratio.bsr.get_bsr(*args). All functions and classes are fully\r\ndocumented. The best way to understand how this works is to look at demo.py\r\nfor an example project.\r\n\r\nExample:\r\n import blast_score_ratio.bsr as bsr\r\n bsr.test()\r\n\r\nRequires NCBI BLAST+ command line >=2.2.29 application available here:\r\n ftp://ftp.ncbi.nlm.nih.gov/blast/executables/blast+/LATEST/\r\nBLAST binaries must be in your computer's path.\r\nAlso requires biopython and matplotlib packages.\r\n\r\ntested with python v3.6.0, biopython v1.68, matplotlib v2.0.0 on Windows 10\r\n", "description_content_type": null, "docs_url": null, "download_url": "", "downloads": { "last_day": -1, "last_month": -1, "last_week": -1 }, "home_page": "", "keywords": "", "license": "", "maintainer": "", "maintainer_email": "", "name": "blast-score-ratio", "package_url": "https://pypi.org/project/blast-score-ratio/", "platform": null, "project_url": "https://pypi.org/project/blast-score-ratio/", "project_urls": null, "release_url": "https://pypi.org/project/blast-score-ratio/1.0.6/", "requires_dist": null, "requires_python": "", "summary": "Get BLAST Score Ratios (BSR; 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