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        "author": "Nolan Woods",
        "author_email": "nolan_w@sfu.ca",
        "bugtrack_url": null,
        "classifiers": [
            "Environment :: Console",
            "Intended Audience :: Science/Research",
            "License :: OSI Approved :: MIT License",
            "Operating System :: POSIX",
            "Programming Language :: Python :: 3.7",
            "Topic :: Scientific/Engineering :: Bio-Informatics"
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        "description": ".. image:: https://zenodo.org/badge/195302632.svg\n    :target: https://zenodo.org/badge/latestdoi/195302632\n\n==================\nBioPython-Convert\n==================\n\nInterconvert various file formats supported by BioPython.\n\nSupports querying records with JMESPath.\n\nInstallation\n------------\n::\n\n    pip install biopython-convert\n\nor::\n\n    conda install biopython-convert\n\nor::\n\n    git clone https://github.com/brinkmanlab/BioPython-Convert.git\n    cd BioPython-Convert\n    ./setup.py install\n\nUse\n---\n::\n\n    biopython.convert [-s] [-v] [-i] [-q JMESPath] input_file input_type output_file output_type\n        -s Split records into seperate files\n        -q JMESPath to select records. Must return list of SeqIO records or mappings. Root is list of input SeqIO records.\n        -i Print out details of records during conversion\n        -v Print version and exit\n\nSupported formats\n    abi, abi-trim, ace, cif-atom, cif-seqres, clustal, embl, fasta, fasta-2line, fastq-sanger, fastq,\n    fastq-solexa, fastq-illumina, genbank, gb, ig, imgt, nexus, pdb-seqres, pdb-atom, phd, phylip, pir, seqxml,\n    sff, sff-trim, stockholm, swiss, tab, qual, uniprot-xml, gff3\n\nJMESPath_\n---------\nThe root node for a query is a list of SeqRecord_ objects. The query can return a list with a subset of these or\na mapping, keying to the `constructor parameters`_ of a SeqRecord object.\n\n\nExamples:\n    Append a new record::\n\n        [@, [{`seq`: `AAAA`, `name`: `my_new_record`}]] | []\n\n    Filter out any plasmids::\n\n        [?!(features[?type==`source`].qualifiers.plasmid)]\n\n    Keep only the first record::\n\n        [0]\n\n\nSee CONTRIBUTING.rst_ for information on contributing to this repo.\n\n.. _CONTRIBUTING.rst: CONTRIBUTING.rst\n.. _JMESPath: http://jmespath.org/\n.. _SeqRecord: https://biopython.org/DIST/docs/api/Bio.SeqRecord.SeqRecord-class.html\n.. _constructor parameters: https://biopython.org/DIST/docs/api/Bio.SeqRecord.SeqRecord-class.html#__init__",
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        "keywords": "convert,biopython,bioinformatics,gff,genbank,embl,filter,fasta,fastq",
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