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        "author": "Yifan Peng",
        "author_email": "yifan.peng@nih.gov",
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        "description": "`biop` -- JSON format for text annotation\n=========================================\n\nBioP JSON format can be used to share text documents and annotations.\n\n``biop`` exposes an API familiar to users of the standard library ``marshal`` and ``pickle`` modules.\n\nDevelopment of ``biop`` happens on GitHub: https://github.com/yfpeng/pengyifan-biop\n\n\nGetting started\n---------------\n\nInstalling ``biop`` (with `conda`)\n\n.. code:: bash\n\n    $ git clone https://github.com/yfpeng/pengyifan-biop.git\n    $ cd pengyifan-biop\n    $ conda env create -f environment2.7.yml\n    $ source activate biop\n    $ python setup.py\n\nEncoding the BioC collection object ``collection``:\n\n.. code:: python\n\n    import bioj\n    # Serialize ``PDocument`` to a BioP formatted ``str``.\n    bioc.dumps(document)\n\n    # Serialize ``PDocument`` as a BioP formatted stream to ``fp``.\n    with open(filename, 'w') as fp\n        bioc.dump(document, fp)\n\nDecoding the BioP JSON file:\n\n.. code:: python\n\n    import biop\n\n    # Deserialize ``fp`` to a BioP document object.\n    with open(filename, 'r') as fp:\n        biop.load(fp)\n\nValidation\n----------\n\nTo validate the dataset format, run\n\n.. code:: bash\n\n    jsonschema -i tests/foo.json biop_schema.json\n\n\nContributing\n------------\n\nPlease read `CONTRIBUTING </CONTRIBUTING.md>`_ for details on our code of conduct, and the process for submitting pull requests to us.\n\nDevelopers\n----------\n\n-  Yifan Peng (yifan.peng@nih.gov)\n\nLicense\n-------\n\nsee `LICENSE.txt </LICENSE.txt>`_.\n\nAcknowledgments\n---------------\n\nWe are grateful to the folowing projects: `BioC <http://bioc.sourceforge.net/>`_ and `Brat <http://brat.nlplab.org/>`_.",
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