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        "author": "Daniel Domingo-Fern\u00e1ndez and Charles Tapley Hoyt",
        "author_email": "daniel.domingo.fernandez@scai.fraunhofer.de",
        "bugtrack_url": null,
        "classifiers": [
            "Development Status :: 4 - Beta",
            "Environment :: Console",
            "Intended Audience :: Developers",
            "Intended Audience :: Science/Research",
            "License :: OSI Approved :: MIT License",
            "Operating System :: OS Independent",
            "Programming Language :: Python",
            "Programming Language :: Python :: 3.6",
            "Programming Language :: Python :: 3.7",
            "Programming Language :: Python :: 3 :: Only",
            "Topic :: Scientific/Engineering :: Bio-Informatics"
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        "description": "Bio2BEL WikiPathways |build| |coverage| |documentation| |zenodo|\n================================================================\nThis package allows the enrichment of BEL networks with WikiPathways information by wrapping its RESTful API.\nFurthermore, it is integrated in the `ComPath environment <https://github.com/ComPath>`_ for pathway database\ncomparison.\n\nInstallation |pypi_version| |python_versions| |pypi_license|\n------------------------------------------------------------\n``bio2bel_wikipathways`` can be installed easily from `PyPI <https://pypi.python.org/pypi/bio2bel_wikipathways>`_ with\nthe following code in your favorite terminal:\n\n.. code-block:: sh\n\n    $ python3 -m pip install bio2bel_wikipathways\n\nor from the latest code on `GitHub <https://github.com/bio2bel/wikipathways>`_ with:\n\n.. code-block:: sh\n\n    $ python3 -m pip install git+https://github.com/bio2bel/wikipathways.git@master\n\nSetup\n-----\nWikiPathways can be downloaded and populated from either the Python REPL or the automatically installed command line\nutility.\n\nThe following resources will be automatically installed and loaded in order to fully populate the tables of the\ndatabase:\n\n- `Bio2BEL HGNC <https://github.com/bio2bel/hgnc>`_\n\nPython REPL\n~~~~~~~~~~~\n.. code-block:: python\n\n    >>> import bio2bel_wikipathways\n    >>> wikipathways_manager = bio2bel_wikipathways.Manager()\n    >>> wikipathways_manager.populate()\n\nCommand Line Utility\n~~~~~~~~~~~~~~~~~~~~\n.. code-block:: bash\n\n    bio2bel_wikipathways populate\n\nOther Command Line Utilities\n----------------------------\n- Run an admin site for simple querying and exploration :code:`python3 -m bio2bel_wikipathways web` (http://localhost:5000/admin/)\n- Export gene sets for programmatic use :code:`python3 -m bio2bel_wikipathways export`\n\nCitation\n--------\n- Slenter, D.N., et al WikiPathways: a multifaceted pathway database bridging metabolomics to other omics research\n  Nucleic Acids Research, (2017) doi.org/10.1093/nar/gkx1064\n- Kutmon, M., et al. WikiPathways: capturing the full diversity of pathway knowledge Nucl. Acids Res., 44, D488-D494\n  (2016) doi:10.1093/nar/gkv1024\n- Kelder, T., et al. WikiPathways: building research communities on biological pathways. Nucleic Acids Res. 2012\n  Jan;40(Database issue):D1301-7\n\n.. |build| image:: https://travis-ci.org/bio2bel/wikipathways.svg?branch=master\n    :target: https://travis-ci.org/bio2bel/wikipathways\n    :alt: Build Status\n\n.. |coverage| image:: https://codecov.io/gh/bio2bel/wikipathways/coverage.svg?branch=master\n    :target: https://codecov.io/gh/bio2bel/wikipathways?branch=master\n    :alt: Coverage Status\n\n.. |documentation| image:: http://readthedocs.org/projects/bio2bel-interpro/badge/?version=latest\n    :target: http://bio2bel.readthedocs.io/projects/wikipathways/en/latest/?badge=latest\n    :alt: Documentation Status\n\n.. |climate| image:: https://codeclimate.com/github/bio2bel/wikipathways/badges/gpa.svg\n    :target: https://codeclimate.com/github/bio2bel/wikipathways\n    :alt: Code Climate\n\n.. |python_versions| image:: https://img.shields.io/pypi/pyversions/bio2bel_wikipathways.svg\n    :alt: Stable Supported Python Versions\n\n.. |pypi_version| image:: https://img.shields.io/pypi/v/bio2bel_wikipathways.svg\n    :alt: Current version on PyPI\n\n.. |pypi_license| image:: https://img.shields.io/pypi/l/bio2bel_wikipathways.svg\n    :alt: MIT License\n\n.. |zenodo| image:: https://zenodo.org/badge/118924155.svg\n    :target: https://zenodo.org/badge/latestdoi/118924155",
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        "keywords": "Biological Expression Language,BEL,WikiPathways,Systems Biology,Networks Biology",
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        "name": "bio2bel-wikipathways",
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