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        "author": "Daniel Domingo-Fern\u00e1ndez and Charles Tapley Hoyt",
        "author_email": "daniel.domingo.fernandez@scai.fraunhofer.de",
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            "Environment :: Console",
            "Intended Audience :: Developers",
            "Intended Audience :: Science/Research",
            "License :: OSI Approved :: MIT License",
            "Operating System :: OS Independent",
            "Programming Language :: Python",
            "Programming Language :: Python :: 3.6",
            "Programming Language :: Python :: 3.7",
            "Programming Language :: Python :: 3 :: Only",
            "Topic :: Scientific/Engineering :: Bio-Informatics"
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        "description": "Bio2BEL Reactome |build| |coverage| |documentation| |zenodo|\n============================================================\nThis package allows the enrichment of BEL networks with Reactome information by wrapping its RESTful API.\nFurthermore, it is integrated in the `ComPath environment <https://github.com/ComPath>`_ for pathway database\ncomparison.\n\nInstallation\n------------\nThis code can be installed with :code:`pip3 install git+https://github.com/bio2bel/reactome.git`\n\n\nThese two resources will be installed together with this package and can be quickly loaded by running the following\ncommands in your terminal:\n\n- :code:`python3 -m bio2bel_hgnc populate`\n- :code:`python3 -m bio2bel_chebi populate`\n\nInstallation |pypi_version| |python_versions| |pypi_license|\n------------------------------------------------------------\n``bio2bel_reactome`` can be installed easily from `PyPI <https://pypi.python.org/pypi/bio2bel_reactome>`_ with the\nfollowing code in your favorite terminal:\n\n.. code-block:: sh\n\n    $ python3 -m pip install bio2bel_reactome\n\nor from the latest code on `GitHub <https://github.com/bio2bel/reactome>`_ with:\n\n.. code-block:: sh\n\n    $ python3 -m pip install git+https://github.com/bio2bel/reactome.git@master\n\nSetup\n-----\nReactome can be downloaded and populated from either the Python REPL or the automatically installed command line\nutility.\n\nThe following resources will be automatically installed and loaded in order to fully populate the tables of the\ndatabase:\n\n- `Bio2BEL CHEBI <https://github.com/bio2bel/chebi>`_\n- `Bio2BEL HGNC <https://github.com/bio2bel/hgnc>`_\n\nPython REPL\n~~~~~~~~~~~\n.. code-block:: python\n\n    >>> import bio2bel_reactome\n    >>> reactome_manager = bio2bel_reactome.Manager()\n    >>> reactome_manager.populate()\n\nCommand Line Utility\n~~~~~~~~~~~~~~~~~~~~\n.. code-block:: bash\n\n    bio2bel_reactome populate\n\nOther Command Line Utilities\n----------------------------\n- Run an admin site for simple querying and exploration :code:`python3 -m bio2bel_reactome web` (http://localhost:5000/admin/)\n- Export gene sets for programmatic use :code:`python3 -m bio2bel_reactome export`\n\nCitation\n--------\n- Fabregat, Antonio et al. \u201cThe Reactome Pathway Knowledgebase.\u201d Nucleic Acids Research 44.Database issue (2016):\n  D481\u2013D487. PMC. Web. 6 Oct. 2017.\n- Croft, David et al. \u201cThe Reactome Pathway Knowledgebase.\u201d Nucleic Acids Research 42.Database issue (2014): D472\u2013D477.\n  PMC. Web. 6 Oct. 2017.\n\n.. |build| image:: https://travis-ci.org/bio2bel/reactome.svg?branch=master\n    :target: https://travis-ci.org/bio2bel/reactome\n    :alt: Build Status\n\n.. |coverage| image:: https://codecov.io/gh/bio2bel/reactome/coverage.svg?branch=master\n    :target: https://codecov.io/gh/bio2bel/reactome?branch=master\n    :alt: Coverage Status\n\n.. |documentation| image:: http://readthedocs.org/projects/bio2bel-interpro/badge/?version=latest\n    :target: http://bio2bel.readthedocs.io/projects/reactome/en/latest/?badge=latest\n    :alt: Documentation Status\n\n.. |climate| image:: https://codeclimate.com/github/bio2bel/reactome/badges/gpa.svg\n    :target: https://codeclimate.com/github/bio2bel/reactome\n    :alt: Code Climate\n\n.. |python_versions| image:: https://img.shields.io/pypi/pyversions/bio2bel_reactome.svg\n    :alt: Stable Supported Python Versions\n\n.. |pypi_version| image:: https://img.shields.io/pypi/v/bio2bel_reactome.svg\n    :alt: Current version on PyPI\n\n.. |pypi_license| image:: https://img.shields.io/pypi/l/bio2bel_reactome.svg\n    :alt: MIT License\n\n.. |zenodo| image:: https://zenodo.org/badge/103138323.svg\n    :target: https://zenodo.org/badge/latestdoi/103138323",
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