{ "info": { "author": "Charles Tapley Hoyt", "author_email": "charles.hoyt@scai.fraunhofer.de", "bugtrack_url": null, "classifiers": [ "Development Status :: 4 - Beta", "Environment :: Console", "Intended Audience :: Developers", "Intended Audience :: Science/Research", "License :: OSI Approved :: MIT License", "Operating System :: OS Independent", "Programming Language :: Python", "Programming Language :: Python :: 3.6", "Programming Language :: Python :: 3.7", "Topic :: Scientific/Engineering :: Bio-Informatics" ], "description": "Bio2BEL ExPASy |build| |coverage| |docs| |zenodo|\n=================================================\nThis repository downloads and parses the enzyme classes from the ExPASy ENZYME database\n\nInstallation |pypi_version| |python_versions| |pypi_license|\n------------------------------------------------------------\n``bio2bel_expasy`` can be installed easily from `PyPI `_ with the\nfollowing code in your favorite terminal:\n\n.. code-block:: sh\n\n $ python3 -m pip install bio2bel_expasy\n\nor from the latest code on `GitHub `_ with:\n\n.. code-block:: sh\n\n $ python3 -m pip install git+https://github.com/bio2bel/expasy.git@master\n\nor check the `installation instructions `_.\n\nSetup\n-----\nExPASy can be downloaded and populated from either the Python REPL or the automatically installed command line\nutility.\n\nPython REPL\n~~~~~~~~~~~\n.. code-block:: python\n\n >>> import bio2bel_expasy\n >>> expasy_manager = bio2bel_expasy.Manager()\n >>> expasy_manager.populate()\n\nCommand Line Utility\n~~~~~~~~~~~~~~~~~~~~\n.. code-block:: bash\n\n bio2bel_expasy populate\n\nProgrammatic Interface\n----------------------\nTo enrich the proteins in a BEL Graph with their enzyme classes, use:\n\n>>> from bio2bel_expasy import enrich_proteins\n>>> graph = ... # get a BEL graph\n>>> enrich_proteins(graph)\n\nCitations\n---------\nGasteiger, E., *et al.* (2003). `ExPASy: The proteomics server for in-depth protein knowledge and analysis\n`_. Nucleic Acids Research, 31(13), 3784\u20138.\n\n\n.. |build| image:: https://travis-ci.org/bio2bel/expasy.svg?branch=master\n :target: https://travis-ci.org/bio2bel/expasy\n :alt: Build Status\n\n.. |coverage| image:: https://codecov.io/gh/bio2bel/expasy/coverage.svg?branch=master\n :target: https://codecov.io/gh/bio2bel/expasy?branch=master\n :alt: Coverage Status\n\n.. |docs| image:: https://readthedocs.org/projects/bio2bel-expasy/badge/?version=latest\n :target: https://bio2bel.readthedocs.io/projects/expasy/en/latest/?badge=latest\n :alt: Documentation Status\n\n.. |python_versions| image:: https://img.shields.io/pypi/pyversions/bio2bel_expasy.svg\n :alt: Stable Supported Python Versions\n\n.. |pypi_version| image:: https://img.shields.io/pypi/v/bio2bel_expasy.svg\n :alt: Current version on PyPI\n\n.. |pypi_license| image:: https://img.shields.io/pypi/l/bio2bel_expasy.svg\n :alt: Apache 2.0 License\n\n.. |zenodo| image:: https://zenodo.org/badge/100023822.svg\n :target: https://zenodo.org/badge/latestdoi/100023822\n\n\n", "description_content_type": "", "docs_url": null, "download_url": "", "downloads": { "last_day": -1, "last_month": -1, "last_week": -1 }, "home_page": "https://github.com/bio2bel/expasy", "keywords": "Biological Expression Language,BEL,Systems Biology,Networks Biology,ExPASy", "license": "MIT License", "maintainer": "Charles Tapley Hoyt", "maintainer_email": "charles.hoyt@scai.fraunhofer.de", "name": "bio2bel-expasy", "package_url": "https://pypi.org/project/bio2bel-expasy/", "platform": "", "project_url": "https://pypi.org/project/bio2bel-expasy/", "project_urls": { "Homepage": "https://github.com/bio2bel/expasy" }, "release_url": "https://pypi.org/project/bio2bel-expasy/0.2.0/", "requires_dist": [ "pybel (<0.13.0,>=0.12.0)", "bio2bel (<0.3.0,>=0.2.0)", "requests", "tqdm", "sqlalchemy", "networkx (>=2.1)", "click", "pandas", "sphinx; 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